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16-2104-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8964407 [Map]; Strand: c
      • AT1G25520.1 - [+] show detail - Uncharacterized protein family (UPF0016)
        Distance: 0; Region: exon13 (3UTR)
    Flanking Genome Sequence: 16-2104-1 - 3-prime edge 
    NGTTNNCCCG ANCTGNTNNN ATCNNANCCT CTGNCAGTTT NATCTGNCTA 
    CACGTTGAAA ACATTGAAAT GTGCTGAAGC AGCCATCGTG ACATTCAATA 
    AAGTTTCTTN GGTAATCAGG GCTTAATCCT CTTTTGTTTT TNGGAGTCAT 
    TTGGATTTTG AAATGTTTTG CAAGGATTTG ACTCAATGAG ATACAAAATG 
    TGGTTTTGTT TTATTATCGN ATAACAAAAT TATTTGTAAG ATAAGAAATA 
    GAAAGACTAG GACAAGTGTA GAGGATCTTA GGTTTGATGT TAAGAAGACC 
    ACATATGATG CAACATAATA CACATCTACT AGTAATATGT CTTATTGAAC 
    AAGTAGCATT ATACATCACT CTCTAACTCG ATCCGACCAT CAGTTAATTT 
    AGATGATTTA TTCCTACACT TTTTAATTTA GATGATCCAA TGATTCATGC 
    TNTAGCTGTA CAANGATCTA TCTCAATATT AAGCGTANTA AACCTATAAN 
    GTAGAAGAAT CCTGCAATGA TGTTCCTCAT CCCTNCAATT GTTTGACGCT 
    AACATTATGA ACACTCCTAC GATANTGGAG ATCTGCCCAC AGATATATAT 
    AAATCAGCTG TCTANATATT GTTCATCGTC NGAAGAATAT ACATANANAT 
    CGAAAGATAT ATATNTTTNC CCAATTGACG AACCNGGTGG CCGCTNAATC 
    TCCNTTGGNN TNTTGATGAT NAGCNACTAT TATNCTTGGG AGCCTNACTG 
    AAAGCTCATG ATCATCATTA TGTNCNNNCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8964296 [Map]; Strand: c
      • AT1G25520.1 - [+] show detail - Uncharacterized protein family (UPF0016)
        Distance: 0; Region: exon13 (3UTR)
    Flanking Genome Sequence: 16-2104-1 - 5-prime edge 
    TGTAAATGTC TAATAAACAA AATTAAATGT CTAATAAACT ATGGATAGTA 
    ACAGTTCTTC CTCTTCATCA GTCTCCCTAC AAACCTGCAC TTTTTTTAAC 
    AAAAACTATA GCGTAAGACA GAAGACTGTG GTGGAAAAGA AATTGATGAA 
    CATCAGAAAT AGATTAAGAT TTAGAAACAT TACCATAAGA AAGCATTAAG 
    CCTCAACAGA AGTAAGATAC GATTGGATGC CAAAAATGAT GAAAAGCATT 
    CC

AT1G25520.1

Model type
Protein coding
Short Description
Uncharacterized protein family (UPF0016)
Computational Description
Uncharacterized protein family (UPF0016); INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G68650.1); Has 1806 Blast hits to 1733 proteins in 669 species: Archae - 27; Bacteria - 1021; Metazoa - 159; Fungi - 140; Plants - 210; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).
Link
InterPro Scan - TAIR