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16-1842-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8952378 [Map]; Strand: w
      • AT1G25490.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-1842-1 - 5-prime edge 
    CGNGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC NGGCTANCTN TNTGATCGCT GAGATCATGA 
    CTATGTTCTN TGANCGAACT AANGATGGTA CTTAATGTNG GAATATATCG 
    TACTTTATAT GTGCATCATC ACTTAGAAAT AGTTTGCATA GACCCAAGAG 
    TATGGTAAAG AGATCACATT TGAATTAATA AACGCTGTTT GATGAAATAT 
    ATTGGATACT TACCTCTTCA GAAATGTTTG NTTTATCTGT GCTTATATTG 
    GTTAAACTTT AACCTTCATT TCAGACCAAG ATTCTGTGAG ACTATTGGCT 
    GTTGAAGGGT GTGCAGCTCT TGGAAAGTTG TTGGAACCTC AGGATTGTGT 
    TGCACGCATT TTACCTGTTA TTGGTAATTT CTCTCAGGNG AATTGAGCTT 
    TGTTTTTTTC ATTCATGGAT NTTTCAGGTA ATTGTCTGCT GNNCCNTGNN 
    NAATNTTCAT CGGGNNAAGN TNCCANNCCG GGGNGGGGGC CNCNNNGGGA 
    CGNANNNAGG GNGNNNNAAA GGGNGNNNCC NCCNNGNAAC CNGNNNNAGN 
    GNNNANTNNN ANNANGGGNT NNNNNTNNNN NGGGNGANNG NNGCGNNGNN 
    NNNNNGANGG GNNNGNGNNN NGNGTCNGAN NAGGGGNNGG NGGNGNTNGN 
    AAANNNNGNG AGGNAGANNC NANANNGNAA NGNNGNNAGG GNNGNGCNGG 
    NNNNNAGAGA ANANTNNNNN NCACANTNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8952366 [Map]; Strand: w
      • AT1G25490.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-1842-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    GTAGCAAATT TCCCCAGGTT AGATGCAGCA GCTCTTCGCA CCATTGGCAT 
    ATCATCTTTG CACAACTGGC TATAAGTAGC CCGTAACTCA GTCTTCAACA 
    CATCAGTGCA ACCTTGGTAT GCAACATGAA ATATACCACA TGCAGAAACT 
    CTTGCTGCAA ACCATTCACC ACCCGCTAAC CTCTACAAGA CAAACAACAA 
    AACAAAAAAA AAAGCT

AT1G25490.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Curator Summary
One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem
Computational Description
ROOTS CURL IN NPA (RCN1); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to ethylene stimulus, abscisic acid mediated signaling pathway, regulation of stomatal movement, positive regulation of abscisic acid mediated signaling pathway, auxin polar transport; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1); Has 2785 Blast hits to 1557 proteins in 250 species: Archae - 15; Bacteria - 74; Metazoa - 1400; Fungi - 416; Plants - 342; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink).
Link
InterPro Scan - TAIR