1. Home
  2. Mutant Lines
  3. 16-0389-1

16-0389-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17364191 [Map]; Strand: c
      • AT5G43270.2 - [+] show detail - squamosa promoter binding protein-like 2
        Distance: -418; Region: promoter
    Flanking Genome Sequence: 16-0389-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAATAAT ATAATTGAGC CATACCTGCT GAACGGTTGT 
    CCTCCAGCAC AATGATAACT CCAACCAACT TTTCTTTTTT GTGATAAATA 
    CTATAAAATT AACTTATCTA AATCAGTTTA AGAACTTGCT CTTAAGCTAC 
    GAGCTTTGTA TTAAATTAAA CTAAAACATA TACTAAAGCA TGGGTTGTCT 
    TGATTTTGAC GCTATTTGAT CTTACGAAAA TCCACTTTTT TCATATTTTA 
    ACTCTTCATA TTCAATTTTT TTTTTTTTTT TTTNGGNTNA AATTAAAAAN 
    NTTTNNTNAA AAAAAAAAAA NNTTGGNTTT TCCCNGGGAA ANNAAANNAA 
    NNNCCNAAAA ANGGGNAANC NGANAAANGT NTTTGNNCCC CNCNAANTTN 
    CCAAATNGGG NNNTNAGGGN NAAANANNCN AANGGNTTTT TTTTTTTTTT 
    TTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17364270 [Map]; Strand: c
      • AT5G43270.2 - [+] show detail - squamosa promoter binding protein-like 2
        Distance: -497; Region: promoter
    Flanking Genome Sequence: 16-0389-1 - 3-prime edge 
    AATCGAAAAC GGTAGCAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT 
    CTCTTCTATA TAATATACAC AACTATGATA TATTTATTTT GGTATATACT 
    TTTTTTTTTT TTNCCCNTTT TNGGGNCNNN TTTTTTTTTT TTTAAAAAAA 
    AAAAAAAAAA AAACCTTTTT TNGGNCCCCN CCNNNNTTTT GGGGNTNGGT 
    TTTTAAANAA AAANGGNTNA ATTTCCCCNA NNAAATTTTN GNTTTTCCNG 
    GGNNTNATTT TNGNAAAANN AAANNTTNNT TTNGGNAAAN GNAAAAGNTT 
    CCCNNAAAAA AACCCTTTTT TTTTNGGNNN AAANCCCNAA NNTTNGGNTT 
    TTTTNNNCCN CNTTNAANNA AAANTNNTNN AAANCNTTAA AAAGGGGGGG 
    NAAAAANNGG TTANCCCTTA AACCCCCTTT TTAAAANNGA AAAANTNCNT 
    TTTAAGNNGG GGGNNAAANN TTNTNGGGGG GGATTNGGGN TTTCNNNATC 
    CCCCCGGGTT NGNAANTAAA CGGTCCTAAA NCTTNTNGGG GGGGTTTNCC 
    CGGGGCCCCC NTGGAAAAAN AAGGNNGGGG GCNNGGGGAA AATTTTTNTT 
    GGGGGTTTCC CNCCCNTGGC CCCCCNAATT TGGGGAANNA AATTTNGGAT 
    TTAAACCCNC CTTNTTTTTT TNTNTAAACC AAAATTTTNT NCNCCCCCAA 
    ANATTTTTTG GGGGGGCAAG GGGGNCAANN CCCGGGCCCT TTTAAGAANG 
    GGGNGGGGTT TTGGGGTAAN TGGGGGGGNA NAATTTCGCC NTTNTTGGAA 
    AANAAAAAAA CCTGGTT

AT5G43270.2

Model type
Protein coding
Short Description
squamosa promoter binding protein-like 2
Curator Summary
member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.
Computational Description
squamosa promoter binding protein-like 2 (SPL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 10 (TAIR:AT1G27370.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR