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16-0258-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10706066 [Map]; Strand: c
      • AT4G19680.2 - [+] show detail - iron regulated transporter 2
        Distance: 1265; Region: intergenic
      • AT4G19690.1 - [+] show detail - iron-regulated transporter 1
        Distance: -1360; Region: intergenic
    Flanking Genome Sequence: 16-0258-1 - 3-prime edge 
    GNTATGAGGC ATGCCANGGA NTATNGNATA CATACTCGGC NTGGACNGTN 
    TCGAATATAC AGGATAATGT AGATAACTAT ATTTTCTATA ATNTATTNTG 
    NGTCAACCTA TTTTTTCTAT GATTCTGATG ATTAATTGCA TGACAATCAA 
    TCAAATTAAT TATGCCTTCT TCTATATAAC CATGCAAAAC CAAAAAAAAA 
    AANATTNTTT CAAANCNACT NGAAAATCAA AAAAACNCAT AAANCCTAAT 
    ANACNTNAAA TTATGTNTNC AGTTNTAACA TTGAAANATC TNAATNCNTT 
    NCCTAAAANA NANCTANATT AATANCCNTA AANCCAATAN TCNTTAAGTC 
    AANANCCCCA NAATNTTATA AANNAAGNCA GGGACTNTNT GTNCNTGTAA 
    AAANGCGTAA GTNCANANCT AAANGNCCCT TTTTTAGGAC CNCANGGATN 
    GNCNCNTTAA ACNTTCNTNC CCNATTTNNN GGAATTACNA NCCNGGGCCG 
    GGNACCACCC GNGCCCCTNT AA

AT4G19680.2

Model type
Protein coding
Short Description
iron regulated transporter 2
Curator Summary
encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.
Computational Description
iron regulated transporter 2 (IRT2); FUNCTIONS IN: zinc ion transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: zinc ion transport, cellular response to iron ion starvation, iron ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: root epidermis; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron-regulated transporter 1 (TAIR:AT4G19690.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19690.1

Model type
Protein coding
Short Description
iron-regulated transporter 1
Curator Summary
Fe(II) transport protein (IRT1)
Computational Description
iron-regulated transporter 1 (IRT1); FUNCTIONS IN: manganese ion transmembrane transporter activity, zinc ion transmembrane transporter activity, cadmium ion transmembrane transporter activity, copper uptake transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 2 (TAIR:AT4G19680.2); Has 937 Blast hits to 936 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 53; Fungi - 387; Plants - 413; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR