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15-5192-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3484105 [Map]; Strand: c
      • AT1G10560.1 - [+] show detail - plant U-box 18
        Distance: -475; Region: promoter
    Flanking Genome Sequence: 15-5192-1 - 3-prime edge 
    AAGAAGAAAA AATTAANNNN CTNTTGNGGN NACTGGAGTA TTTTTTCGAC 
    CGTTACCGAC CGTTTTCATG TGTANACCCT TTCCATTTCC AAAANTTTAA 
    AAGCTATACA ATNAGATAAC ATAGTTTNGG TTTCTGTAAA TCATGAAATT 
    AATCACTTCT ACCGTTCTAC CGAAAAACAT AANAGAATCT ATGAAACAAT 
    CGANTAAATA AAAAAATTTG AAGGAGGAAA TATCCTATCC AAAGTCCTCA 
    CACATGGGTC GTACCAAGTG TCGGCAGACT CCATGCNCGT AACTTCATGA 
    CCACNNGGAT CACCATCCCG GNCCAGANAA CCACNCNNTN CCNTATCNGG 
    GGAGATCGAA NNANANNTNN ATNCCTNNNC GAAAAGNAAG ACAAATNATG 
    NNAATGNGNT GGNNGNTNNT ACANANANNN TNNAGNGTNG TCNNCCACNN 
    NGAACNCNNG NGNGNGAGNG NNNGNCGNNC NANTCCAGNN CGGAANGNNG 
    GNANAGAATN CNNNGAACNT NTAANNAGGG NATANNGTAA TGNNNNTGCA 
    NANAGCAANG AGGNANTNAG GNGGCAGNAA TGNNAGNNGT TNNGAGGCCN 
    NTACNCNTAN GNNGTNTNNN GNANAGATNA TNCCNANGNA TGGNNGNNGN 
    NGGCNANGAN ANNACNNANG NGAAAAACNG GGGCNGGCAN NGCNGAGGNN 
    CANTANCNNN ANAAAACGTA GNANCNNNAA NAGNNNAAGA NANTATANAA 
    ATACNACNNA NNNCCGANCA NNCNNNNGNA TGAGNNNACN AATNANANAA 
    ANAGGATNNN NCNGNNNGNG NNGTNTAANN ACTATANCAT GANTNGACGN 
    ANGNANTACN CAGANNANNG TNGGTGANTA NNNNNGTNCA NTNNGTNGAA 
    AANNGANTNT G

AT1G10560.1

Model type
Protein coding
Short Description
plant U-box 18
Curator Summary
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational Description
plant U-box 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1); Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0; Bacteria - 22; Metazoa - 252; Fungi - 338; Plants - 2172; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR