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15-5005-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7098709 [Map]; Strand: w
      • AT1G20490.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-5005-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CACCTAACCT TTCTCAGGGA GGTCAAATCG 
    TACTTGGCCT TGAGCTGATC TGCACCGTTA ATCATAGCTA CCAAAACCGG 
    TGGAGCCAAA CTCAGAATCG TGGCTTTGTA CTTCTCCACC GCTTGCATCA 
    TATCGTCGAG CCCGAATCTC CGGAGAATCA CCACCGTTGA ACCCGATGCT 
    ACGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7098697 [Map]; Strand: w
      • AT1G20490.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-5005-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAGGAG 
    CACCGTTAAG CAAGGAGGTC ACGGATAGCT TCCTAGAGAA GTATCCAACG 
    GTTGATATTT TTCAAGGATA TGCGTTGACT GAATCGCACG GTTCAGGAGC 
    TTCGACGGAA TCTGTGGAGG AGAGTCTGAA ATACNGGTGC NGGTTGGGTT 
    GTTGTCGTCC GGTATTGAAG CGAGGATTGT GGATC

AT1G20490.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113; Bacteria - 45325; Metazoa - 2980; Fungi - 3725; Plants - 2277; Viruses - 1; Other Eukaryotes - 10584 (source: NCBI BLink).
Link
InterPro Scan - TAIR