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15-2731-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13381243 [Map]; Strand: w
      • AT4G26488.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G26490.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 15-2731-1 - 5-prime edge 
    CAGATGACCG GTCCACCAAC CGGAATCCTG ATTTCTCGTA ATTGCACGAC 
    GAAGAAATGA AAAAGAATAC GGTACAGTTC TCTGAGTCAG TAGTCATCTT 
    CAAAGTCTTT AGCTTTGGCA TGTTTATTCA ACTATATTTC TATTTGCTTA 
    CCCACAACTT GTATAAAAGA AAAAGACCTA GTGAACTCTA TCCAAGAACC 
    GAGATCGGAG TTTGTACTAT TTCCAAGATA AAGAAACTGG AAAGATATTA 
    TCTTTCTATG AAGCAGATCC ATAATTGATC CACAANANAC AGNGCCCANA 
    CCCATGNGTG TTTTTTAATA CAGGTCAACA TNCCTGNNCC CCCCCNGNNA 
    AGNANTTTNA CCCCCCACCC NAAAANNGCC NNCCNTTNAN GCCCNCTNTT 
    GGGGNCCCTT TNGAGNNNAA NGGNNNNNAA NCNNNNNNCN CCCCCNAAAA 
    AAATNNNNNN NNNGGGGNGG NNAAANNCCC CCCCCCCCNN NNNNNNGGNG 
    GGGGGGGGGC CCCCCCCCCN CCCNAAAAGG AGGNNNNNCN CCCCCCCNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13381127 [Map]; Strand: w
      • AT4G26488.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G26490.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-2731-1 - 3-prime edge 
    GTCATCTGAA GTTGGCACCT CCCGTGCAGC TGATAAGAGT AATGAATCAT 
    TCCAAAATGA GCTTTGACTT TGAAGGTACC TCTAATCTCA TATTCTATCT 
    TGTTGTTTTC CAGCTGTCTC CTGAGTTCCA CCGCGTGGTT TACAGGCAAG 
    CCTACCAAAC TAGAGATCAA ACGGATTGGT TCCAACCTCG TCTCATGCTT 
    TTTCTGCAAG AATGGCTGGA CCACTTGCGC TGCAATCAAT CTATTGAAGA 
    AGAAGAGCTC AATCCGAAGC T

AT4G26488.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G26490
Link
InterPro Scan - TAIR

AT4G26490.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56050.1); Has 421 Blast hits to 420 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 421; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR