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15-2686-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5722197 [Map]; Strand: w
      • AT4G08910.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 8813; Region: intergenic
      • AT4G08920.1 - [+] show detail - cryptochrome 1
        Distance: -1906; Region: intergenic
    Flanking Genome Sequence: 15-2686-1 - 5-prime edge
    GGGATAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA AGTAATTTAN AGGTGGNCGA GAGCAGATAT
    CATGATTGTT TTTTTTAATG TATGTAATCC GTNCATTTGT GTCATCATTA
    TTCATTTTTA TATTATTTAT CCGCTTTGTT AAATATATTT TGTCTGATGT
    AAATTAATTG TTGAGAGGTA AACCAATCAT GAAGTTATCT TTAAATTAAT
    GTGTTATTGA TAAAAAAAAA AGTAAATTAG TNGNAAATTT NGTTTTTTTC
    NCCAATTNGT NGNATNCTNA ATCNGANNAA TATTNATNAT TTTCAAAAAN
    GTANGTTGGN ATCTTCNAAT TTTNNCCCNC AAAATTCAAN GNCCTNCCCN
    TNTNANGGAA TTTANCCAAA TNCAAGTANC TAGTTAGGGA TTCTGATTNG
    TNAATTTTTT TTATGTNGGN CTAAGTTATA AATNAATTTT NTTCNANCCT
    AAAATATNTA AGTNTTTNTN TTNANCCAGT NNTNAGTNTC NNGTTTAANG
    CTATTAAAAA ATTTANGTAA ACTNTTCGAN AACTNCCCNC NCCCTAAAAA
    AAGTNNTCGN ANGAAAAAAA TCTAANTTTA ANCTTTCAAA CNTTTTAAAA
    ACANTTTTGA AAATTTTTCN ACANCNNCCC TCNCTTTAAA ATTANTCNAA
    ANAAAAAANG GTAAATAACN ANCCCGGGCC GNNNCCACCG GNCCCCNAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5722194 [Map]; Strand: w
      • AT4G08910.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 8810; Region: intergenic
      • AT4G08920.1 - [+] show detail - cryptochrome 1
        Distance: -1909; Region: intergenic
    Flanking Genome Sequence: 15-2686-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTAAATTTCG AGTGTAAATA ACGTGCCTTT TATTATTTTA TTACTCTTAG
    GAGTATTCAT AATATAGCTA GACAGAGCTT ATTATTTTAT TATATGCATG
    TACAAAAAAT AATAGAGATT ATTATTGATT TTGCCTTTTT CATAAAAATC
    TTGTGAAAAT GACATTTTTC CTAAAATCTT ATAGATC

AT4G08910.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G08920.1

Model type
Protein coding
Short Description
cryptochrome 1
Curator Summary
Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. Functions in perception of blue / green ratio of light. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings.
Computational Description
cryptochrome 1 (CRY1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome C-terminal (InterPro:IPR020978), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 2 (TAIR:AT1G04400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR