Home
Mutant Lines
15-2647-1

15-2647-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 9953054 [Map]; Strand: w
  - AT1G28360.1 - [+] show detail - ERF domain protein 12
    Distance: 314; Region: intergenic
  - AT1G28370.1 - [+] show detail - ERF domain protein 11
    Distance: 2915; Region: intergenic
Flanking Genome Sequence: 15-2647-1 - 5-prime edge
```
AAAGAGATAG AGACTAATGA GAGACGTAAA TGCTGAGCAA GCGTGTGAGT 
TTGGACTGGC TTATTCACTT ACGGACAAGA TATGTGTATT ATGAGTCTTG 
AGTTTGTAAA TAAATTGTAT TTTTTTATTT ATTTTGAAAA TTTTCATATG 
AATT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 10125944 [Map]; Strand: c
- AT1G29025.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: 0; Region: exon4 (CDS)

ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCGTCTA 
AGACGAAAGG CAATAAAGTC AGGAGCATAA TCCCTGCCGC TTTCTTGTTC 
TTAGGATCTG CTCTAATGCT AGCTCCTGCA TAGAGAAACG GCACAAAAGA 
CAAATTAGTC TCGCGTAGAA GATTCTCGAA AAATCAAGAA ACCTGTAAGA 
TTTAAAAATA CCAGCTAGGT TCTTCAATAG ATTAATGCTC TTCTTAACTT 
GTCTTCTTGG ACTACTTATG TCCTGTATCA AATTATAAAA ATCACTTGAT 
GATTCTATAC ACTCAAAAAG AGAAGAAGGA CAAGAAGATC TTACACAAGT 
TATGGACTGA TCATCTGATC TCAAACCAGA CAAGCCAAAG ACAACACAAG 
CTCCCCATTG CATTGTCAAA GCAAAGACAG AGTATCCAAC AGTAACTGCA 
ACATTATTAC CCGTCATCGA GTTTGCTATT TCACGGCTTC CTATCAGTCC 
AGTGGCTGAG ATCAAAACCC AACGTAATGG TAAGATATTT TGTAGTACTC 
AAATTCTGTC TAGGTTATTT CTCCAAAAGA AGAGATGACT TACATAGAAT 
AAGGGCAATT CTTGGGAACA TTGTAAGTAG AGGGAAGATA ATTCCGCCAA 
AGAAACCGAC CTCGAAGATG ACAAAGAGCT

AT1G28360.1

Model type: Protein coding
Short Description: ERF domain protein 12
Curator Summary: encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational Description: ERF domain protein 12 (ERF12); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 5550 Blast hits to 5447 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 5541; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G28370.1

Model type: Protein coding
Short Description: ERF domain protein 11
Curator Summary: encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational Description: ERF domain protein 11 (ERF11); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 6129 Blast hits to 5763 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6120; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G29025.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G29020.1).
Link: InterPro Scan - TAIR