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15-2596-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3963652 [Map]; Strand: c
      • AT5G12250.1 - [+] show detail - beta-6 tubulin
        Distance: -130; Region: promoter
    Flanking Genome Sequence: 15-2596-1 - 5-prime edge 
    CCAATGTTAG AGATTTTTTT ACTATTCATG TGACAACAAT AATTGGTATG 
    TAGGAGTGAA GGAAGAACCG ACAATCACAA TCCAATTAAC ATAAAGTAGC 
    TCCCACATCT TACCCAACGC CATCCTCAAC GTTGATATCT CACCATCCAA 
    CGGCATCCAG CTTCCGATAG ATTAAACCAA TCACAGCCGT TGGATCAAAT 
    TTTACCTTTC CCTCTTCTTA CTCTTTCATA AATAAATCCA ACTTCTTCAC 
    TCTCCACCCG TCTCACTTCC TCTCCTACTC CGGTCGACGA TTATCCCAAT 
    CTCGCCGGGA TTCTCCTCTG CACCGTGAGT TATTGTTTAC TCTGCTATTT 
    CCTTTTTATG TATTGTTTCC TCTCTAGGGA ATGAGATTAT GAACTCCTAC 
    TACTTATTGT GATACTTTGA TCGATTCGTC TTCCTCCAAA TCTGTATCCG 
    CTCTTGATCT GTTTCATATT TTCTCTCTTA ACTTGGATTT TGATTTTCTA 
    TCACTTGAAA ATGTGTTGCC GTTTTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3963726 [Map]; Strand: c
      • AT5G12250.1 - [+] show detail - beta-6 tubulin
        Distance: -204; Region: promoter
    Flanking Genome Sequence: 15-2596-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTCTTTAGG 
    AGTCTTGGAC CATTGGTCTA ACATAGAAAA GATAAGTATT TCGGTAGTAA 
    TGTCAAGATT GTTATTATTT TCCAAACGCA ACTTACAATT TTAGAGAAGC 
    TCTCTTTGGT TACACACTTA ATACACGTCA AATGCATAAA CAAACTCATC 
    AAAAGCCGTA GGAACAGGCA GGAGCAATAC CTTGTAATGA GTGTGTGACA 
    GTATAAAATC GAGCTAAGAA CCACGGGAAA AAAAAATGGT CTCATTGCGT 
    ATGACAATGC GGANAATAGT AAATCACCGT ACCATGGTCG GAGAGTANAT 
    GAATT

AT5G12250.1

Model type
Protein coding
Short Description
beta-6 tubulin
Curator Summary
Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.
Computational Description
beta-6 tubulin (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR