1. Home
  2. Mutant Lines
  3. 15-1893-1

15-1893-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7098821 [Map]; Strand: c
      • AT1G20490.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1893-1 - 5-prime edge 
    TCCGTAGCAT CGGGTTCAAC GGTGGTGATT CTCCGGAGAT TCGGGCTCGA 
    CGATATGATG CAAGCGGTGG AGAAGTACAA AGCCACGATT CTGAGTTTGG 
    CTCCACCGGT TTTGGTAGCT ATGATTAACN GGTGCAGATC AGCTCAAGGC 
    CAAGTACGAT TTGACCTCCC TGAGAAAGGT TAGGTGTGGT GGAGCACCGT 
    TAAGCAAGGA GGTCACGGAT AGCTTCCTAG AGAAGTATCC AACGGTTGAT 
    ATTTTTCAAG GATATGCGTT GACTGAATCG CACGGTTCAG GAGCTTCGAC 
    GGAATCTGTG GAGGAGAGTC TGAAATACGG TGCGGTTGGG TTGTTGTCGT 
    CCGGTATTGA AGCGAGGATT GTGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7098897 [Map]; Strand: c
      • AT1G20490.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1893-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
    CCATAGCGAA CGCCAATAAC CCGAAGGAGT GGAACATCGG CACGGTACAT 
    ACGAATATCT CGTCTCGTTT CCATTTATCG TCGATGTATT TCGCAACGTA 
    AGCTGTTAAA TTCCGGTGAG ACGAGATCAC TCCTTTGCTC GTCCCTGTGG 
    TTCCCGACGA GTAAAGCATC ATCGCCGTGT CGTCCTGGTT GACTCGGTCT 
    CTGACTCGTT GACCACTCGT TTCTTTCTTC ATCATCTCGC TCAAAATCCC 
    AACGACTCTG ACTCCACTAG TGAGCTCCAC TCGCTTCTCG TCTTCTTCGT 
    CGGTGAGGAC GACGGAGATT GCGGCTGCGA GTTTGGGTGC CAGCTGGCTC 
    GTGGTGAAGA CGAGAGTTGG ATTACTTTGG GCGATCTGTT TGGAGATTTC 
    GCCGGAGGTG TTGAGAGTGT TGGCGGTGGT GACGACGGCG CCGAGAGACA 
    TGACGGAGAG GCAAACGACG GGAATGTAGA TTGAATTTGG AGAGAGGATG 
    AGGACGACGT CGCCTCTTCG TATTCCGACT TCATGATATA GACAGTCGGC 
    GACGCGATTG ACGGCTCTCC AGAGATCGGA GAAGCT

AT1G20490.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113; Bacteria - 45325; Metazoa - 2980; Fungi - 3725; Plants - 2277; Viruses - 1; Other Eukaryotes - 10584 (source: NCBI BLink).
Link
InterPro Scan - TAIR