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15-0871-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6594434 [Map]; Strand: w
      • AT3G19070.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G19080.1 - [+] show detail - SWIB complex BAF60b domain-containing protein
        Distance: -910; Region: promoter
    Flanking Genome Sequence: 15-0871-1 - 3-prime edge 
    GCTTAGATGA TGATGATTTG GGTGGCTGAA TAGAGGATGA TGGTGACGAC 
    GGAAAGAATT

AT3G19070.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G06800.2); Has 18617 Blast hits to 9609 proteins in 654 species: Archae - 8; Bacteria - 972; Metazoa - 4790; Fungi - 3902; Plants - 2478; Viruses - 331; Other Eukaryotes - 6136 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G19080.1

Model type
Protein coding
Short Description
SWIB complex BAF60b domain-containing protein
Computational Description
SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT1G49520.1); Has 4780 Blast hits to 2475 proteins in 346 species: Archae - 0; Bacteria - 702; Metazoa - 1207; Fungi - 636; Plants - 993; Viruses - 61; Other Eukaryotes - 1181 (source: NCBI BLink).
Link
InterPro Scan - TAIR