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15-0671-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19447086 [Map]; Strand: w
      • AT2G47390.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -721; Region: promoter
      • AT2G47400.1 - [+] show detail - CP12 domain-containing protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0671-1 - 5-prime edge 
    GTTGTGGTTA AGGCTACATC GGAAGGAGAG ATATCGGAGA AGGTGGAGAA 
    GAGTATACAA GAAGCTAAGG AGACATGCGC TGATGATCCG GTGAGCGGGG 
    AGTGTGTAGC GGCNTTGGGA CGAGGTGGAG GAGCNTGAGT GCNGGCGGCG 
    AGTCATGCTA GGGACAAGAA GAAAGCTGGT GGCTCCGATC CTTTGGAAGA 
    GTATTGCAAT GATAATCCTG AGACTGATGA GTGTCGTACT TATGATAATT 
    AAAAAATATG TTTTTGATGT TCGAATTATG AAACTTTAGG TATGGATCAA 
    TGTTTGTTCT TCTTGTCCCT TGTTGTTATG TTTGTGTTTT TGGTTTGGTT 
    GATGATTGTA ATGTGATAAA TGAATATGAA TAGTACAATA CACAACATAT 
    GTTTCATAAT GTGTTTGGTT CGATTACATT TGCAGTTTCG TGAAATTGAT 
    AATAAAAAAC TCAATTAAGT TTANATGAGG CTGANATGAT CTTAGGTCAC 
    TCGCATACGT TCCTTATTAT TTTTTTGTGG ATGTGGAGAT NTNTGTGTCA 
    AAANCNACGT TGANCCNTNN ANAAANANGA ATTGATCNAN AGTTTCTTAA 
    CNGGTTTAAA ANTGNTNGCC TTGCTGGNNT GGGAATNAAT CTTTGGTTTT 
    ACNAAAANGG GNACAANAAA CANANCCNTN TTNTTNTNTT N

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19447009 [Map]; Strand: w
      • AT2G47390.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -644; Region: promoter
      • AT2G47400.1 - [+] show detail - CP12 domain-containing protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0671-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCAT 
    CCGCTTCATC GAACCGAATT TCCACGGGTA ATTCAACCGG ACCGGACCTA 
    ATACACGAGC CACAGGTCGA ACGACCACTC GTGGAGTCGC GACGTTGAGG 
    CCAGCTGCAG CTATGGTTGT CATCGTCGGA GGATTTTGAT GGAGGAGAAA 
    AGTTTTTTGA TGTGAAGAGA TGAAGAAGAT AAAATATACT CGTTCACGTT 
    ATTAAACTCT GTGAACACAA TCCTCTTATC TTCTAAGAAC CAAGCATATT 
    TTGCCACGTG TACTTAGATT TTTTCACAAA AAGTAGTATT CTACCAATTT 
    GAGAAACATA AGTTTTTCCC CGGAATATTT ATTTTATCAG CCGTTGAACA 
    TTTTTTCTTG AAAATTATAG AAGCT

AT2G47390.1

Model type
Protein coding
Short Description
Prolyl oligopeptidase family protein
Computational Description
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106); BEST Arabidopsis thaliana protein match is: acylaminoacyl-peptidase-related (TAIR:AT4G14570.1); Has 4880 Blast hits to 4877 proteins in 846 species: Archae - 179; Bacteria - 3027; Metazoa - 477; Fungi - 49; Plants - 145; Viruses - 0; Other Eukaryotes - 1003 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47400.1

Model type
Protein coding
Short Description
CP12 domain-containing protein 1
Curator Summary
CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle.
Computational Description
CP12 domain-containing protein 1 (CP12-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of reductive pentose-phosphate cycle; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12 domain-containing protein 2 (TAIR:AT3G62410.1); Has 264 Blast hits to 264 proteins in 70 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR