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13-6009-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5332764 [Map]; Strand: w
      • AT1G15520.1 - [+] show detail - pleiotropic drug resistance 12
        Distance: 0; Region: exon20 (CDS)
    Flanking Genome Sequence: 13-6009-1 - 5-prime edge 
    AGCATAAGGC ATGGCGGAGT ACATTCCGGC GGCTTGTTCT CGGTAAAAGA 
    CAGTTCTTTC GACGTTGACG ACTGGTTGCA CTGAAGCTGC CGTTTTGTAA 
    TCCGAGGAAG AGAACAGCTG TGTACATTGA ACCCATTGCA TTCGATAAAT 
    CCTGTCTCGT TTTCCTGGAG GTGACAAAAA TATTCGAACT TGGTCAATAA 
    GGAGTTTTGT TTTTGTATTG TAAAGTCTAG AATTTTGCTG AGGTTTTTTT 
    AGCTTACGTT TTGCCTCCAA GGTCCCAGAA CATTGTGCCG AACATAAGAG 
    CAATGCCGAT TGTGAAGAGG AATCTCACGG CTGTGTAAGG AGGATTTCTC 
    CAGTAGGACC AGTGTTGTTT CCATAGAGAA GCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5332648 [Map]; Strand: w
      • AT1G15520.1 - [+] show detail - pleiotropic drug resistance 12
        Distance: 0; Region: intron20 (CDS)
    Flanking Genome Sequence: 13-6009-1 - 3-prime edge 
    CTTATGCTTT CGCTCAGGTA CTTCAAAAAA ACATCATAGA GAGTGAAATT 
    TACGATTTTT CGTTGCGGAA ACCTCAAATT CAAACTTCGA TTTGTTCCAG 
    GTTTTCATCG AGATCCCATA CGTTCTCGTG CAAGCGATAG TGTACAGGTC 
    TCATAGTGTA CGCTATGATA GGATTCGAGT GGACGGCGGT GAAGTTCTTC 
    TGGTACCTCT TCTTTATGTA CGGATCATTC TTAACTTTCA CCTTCTACGG 
    AATGATGGCT GTAGCTATGA CGCCTAACCA CCACATCGCC TCCGTCGTCT 
    CCTCCGCTTT CTACGGCATC TGGAATCTCT TCTCCGGCTT CCTCATCCCT 
    CGTCCCGTAA GTACCAACCT TATTATTGTT TAATTTCAAA ATGAGCCAAA 
    ACTTATTGAA ATATTAAATA TTGACCCTAA ACGTTTATAC GAAAACAGAG 
    TATGCCTGTG TGGTGGGAAT GGTACTACTG GCTTTGCCCA GTTGCATGGA 
    CATTGTATGG ATTAATCGCA TCACAGTTCG GTGATATTAC AGAACCTATG 
    GCAGATAGTA ATATGAGTGT GAAGCAATTC ATTAGAGAAT T

AT1G15520.1

Model type
Protein coding
Short Description
pleiotropic drug resistance 12
Curator Summary
ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.
Computational Description
pleiotropic drug resistance 12 (PDR12); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615; Bacteria - 304057; Metazoa - 8776; Fungi - 6428; Plants - 5794; Viruses - 2; Other Eukaryotes - 45311 (source: NCBI BLink).
Link
InterPro Scan - TAIR