1. Home
  2. Mutant Lines
  3. 13-5771-1

13-5771-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5331805 [Map]; Strand: c
      • AT1G15510.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 94; Region: intergenic
      • AT1G15520.1 - [+] show detail - pleiotropic drug resistance 12
        Distance: 53; Region: intergenic
    Flanking Genome Sequence: 13-5771-1 - 5-prime edge 
    ACAACACTGG ATTAGAATGA ATCCTCTACC TAATGATGTT ACATACAGAG 
    CAACTCCTAT TGTATGATAA ACGTTACAGA CAAAACAAAG CCACATATAA 
    TCCAAGTTTC CTGTGTAATA AACTTAACAA TACCTTGATG TGTCTATATT 
    CCTTTTGTAT CCATTCTAAT CTCCACATGA ACATTCTCCA TCTTTAAAGT 
    GGTGGAAATG CTCAGCATCT CTTACTGAGA TTTCTCTTCT TACTGTTTTG 
    GAGATGAACT TTACTGTATC ATGGCAATTT TCACACATAC TGAGATTCTT 
    TGTTACCCAA ATTGGCATTC CTGGGACCGT GTTGATCAGA CCAAATGCAA 
    TGGCCTTTCT CTCGCTATGT CCACAGAATA TCTCATCTCT CGAAATCTCT 
    GTCTCATCCA TAGAACTCGA TTCTGAACTT TTAGTAAGCC CAACTTCACT 
    CATTTTCTCA TAGAACCCCT CTAAAACAGT GTTGATCTCT TTTGTTTGAG 
    GATGGTACTT GTCATCGCTA AGAAAGGCGT GAACTTTACC CTTTACTTCA 
    ACCCAACTGC ATCCTGCATC AACTGTTAGC CCGTTTTCTT TCATCATTCT 
    TCTCACTTTT GCAACTTCTC TCCATTTTCC ACAATCAGCA TACAGATTAC 
    ATAACAGAAT GTAATA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5331921 [Map]; Strand: c
      • AT1G15520.1 - [+] show detail - pleiotropic drug resistance 12
        Distance: 0; Region: exon22 (3UTR)
    Flanking Genome Sequence: 13-5771-1 - 3-prime edge 
    AGTGTTGTTG ATCATCCTTT TATTAATATC AATACGGCAT TACAAAAATA 
    GAAAGAATAG CATATAAACA AAAAGTCTCT TTTTATTTGT GTTACATGAA 
    ATAGAATGCA AAACTATAAA CTGTCTATCG TTTTTGGAAA TTGAAACTCT 
    TGATTCCGAT AGCAAAGATA ACGGCAAAGA GCAAAGGAAA GATGACGTTC 
    ATGGCGGCAA CCACACCCAA GAAACCTTCT CTATATCCAT AGAATT

AT1G15510.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis.
Computational Description
EARLY CHLOROPLAST BIOGENESIS2 (ECB2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 49765 Blast hits to 13993 proteins in 266 species: Archae - 0; Bacteria - 6; Metazoa - 64; Fungi - 140; Plants - 48782; Viruses - 0; Other Eukaryotes - 773 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15520.1

Model type
Protein coding
Short Description
pleiotropic drug resistance 12
Curator Summary
ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.
Computational Description
pleiotropic drug resistance 12 (PDR12); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615; Bacteria - 304057; Metazoa - 8776; Fungi - 6428; Plants - 5794; Viruses - 2; Other Eukaryotes - 45311 (source: NCBI BLink).
Link
InterPro Scan - TAIR