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13-5566-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3534856 [Map]; Strand: c
      • AT3G11280.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -9; Region: promoter
      • AT3G11280.2 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -50; Region: promoter
      • AT3G11285.1 - [+] show detail - pre-tRNA
        Distance: -290; Region: promoter
    Flanking Genome Sequence: 13-5566-1 - 5-prime edge 
    CCAAATCTTC CCAAAAATAA AGAAACCTTT CCTTTTTTTT CTCTTCACTC 
    TGTTCCCATA TCTACAGNGA CTCTTCTCTC TCTGTATATT ACTCTTCCTT 
    CACTATCTCT CTCTCTTTAC TGGGTCTTCT TCAGCTTCTG AGTCTTCTCC 
    TCTCTCTCTA TCTCTCAAGN GGGCTTTGCT TTGCTGTTTT TGTCTTCCTT 
    CGACGACTCA CTTTTGCAGA TTCTCATAAA TTCTTCAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3523566 [Map]; Strand: w
      • AT3G11250.1 - [+] show detail - Ribosomal protein L10 family protein
        Distance: 565; Region: intergenic
      • AT3G11260.1 - [+] show detail - WUSCHEL related homeobox 5
        Distance: -4009; Region: intergenic
    Flanking Genome Sequence: 13-5566-1 - 3-prime edge 
    TCAANANAAN TTTANAAAAN GNAAACGGTN GNAGTCTTTT ACCGACCGTT 
    ACCGACCGTT TTCATCCCCG CTACTACGAA GGAAAGCATA AGAACAAAGA 
    AACGTANNCT TTTAATTGCT CAATGGAAAA GTGTAATACC TTATACCTTC 
    TTCTGCATCA AAATACTTTT AAAATACAAT AATAGCCTCG GTCTTCATCC 
    CCGAGGTTCT TGATCTTATA GAGATCAACT TGTGGATCTA TCGACTAATT 
    TTTGGCAAGC ATATTTGAAA TGTGACATTG TTTTCTTTAA AATTAAACAC 
    AAGCTAAAAT CAACAAATTA AGAATTTTTG TTTTATAGTC TATCTAAATC 
    ATAATATCCT AGTAGCCGTG TGTATTCTAA TGAAGAGTCA GTGACATATA 
    CTCCAATCCT TCATAAATAG AGTTATCGAG CAAAAGCCAT TATGTTATAA 
    GCACATACAA TTCCTAGTTC GCTACCATAT AACCAAAATA ATTTGGTCTC 
    TGATTAAGTT TTTTTTTTTT TTTTTTNGNN CCCCNTTTTN NNNNNNNNAA 
    CCCNNTTNNN NNNA

AT3G11250.1

Model type
Protein coding
Short Description
Ribosomal protein L10 family protein
Computational Description
Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to salt stress, translation; LOCATED IN: cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G09200.1); Has 1983 Blast hits to 1980 proteins in 500 species: Archae - 322; Bacteria - 1; Metazoa - 680; Fungi - 420; Plants - 226; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11260.1

Model type
Protein coding
Short Description
WUSCHEL related homeobox 5
Curator Summary
Arabidopsis thaliana WOX5 protein mRNA
Computational Description
WUSCHEL related homeobox 5 (WOX5); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 7 (TAIR:AT5G05770.1); Has 538 Blast hits to 538 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 538; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11280.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Curator Summary
Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11280.2

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Curator Summary
Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11285.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: CCT)
Link
InterPro Scan - TAIR