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Mutant Lines
13-5470-1

13-5470-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19537381 [Map]; Strand: c
  - AT2G47640.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
    Distance: 0; Region: exon2 (5UTR)
  - AT2G47640.2 - [+] show detail - Small nuclear ribonucleoprotein family protein
    Distance: 0; Region: exon2 (5UTR)
  - AT2G47640.3 - [+] show detail - Small nuclear ribonucleoprotein family protein
    Distance: 0; Region: exon2 (5UTR)
  - AT2G47640.4 - [+] show detail - Small nuclear ribonucleoprotein family protein
    Distance: 0; Region: exon2 (5UTR)
Flanking Genome Sequence: 13-5470-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
CGCGATAAGT CAACATGAGG TATATCTCTC GATGGTTCTA AGTTTCTTCT 
GCATTTTGTG GTGCTCAATT TGAGACTTGT CTAACACTGT GGTGTTTCTC 
TTGATTTTCT ATATTTTTTC TCGCAGCAAG CCAATGGAAG AGGATACCAA 
TGTAAGCT
```

5 prime edge [+] show sequence

Chromosome: 2; Position: 19537373 [Map]; Strand: c
- AT2G47640.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
  Distance: 0; Region: exon2 (5UTR)
- AT2G47640.2 - [+] show detail - Small nuclear ribonucleoprotein family protein
  Distance: 0; Region: exon2 (5UTR)
- AT2G47640.3 - [+] show detail - Small nuclear ribonucleoprotein family protein
  Distance: 0; Region: exon2 (5UTR)
- AT2G47640.4 - [+] show detail - Small nuclear ribonucleoprotein family protein
  Distance: 0; Region: exon2 (5UTR)

GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCTTGTGCGA TTCGCGAGCT TCTTCTCCAC AAAGAATCAC CGAACCTATC 
AAAGTAAAGG AATACGAAAG AGACTCAGGA AAGCAGAATT ACAGATTTTC 
GCACAAGGAA AGATCGAAGA AGTTAGGGTT TTACCTTACC TGATAAATCT 
CGCTTTCGTT TTCCGCAGAT CTCTCTCTCA GAGGAAGAAG AAGAACGACG 
ACTCGATACT CGAAAGTACT TGGCGGACCG GCGCTACAAC ATAGTTAAGT 
TAGGCCTTTC AAATTTTGGG CCTTGTCAAT TTATATGGGC TTTAATGTTT 
TTTTTGGGGG GCTTTAACGT TTTCCAAACG AATATAAATA TTTTAGGTAG 
CCATAACTTA TAAATTCTTT GGGCCATACA TTTTCAAATT TCAAACCATG 
AGACCACCAA TCTTTAATAA TTCACACAAA ATCATAACTC TCTTTTTCAT 
AAATTGTTTT TTGTTTGCCT TGATAAAATT TTATTACACA GTGGATCGTG 
GAACCAAACG GCCACGGTTC AAACCACAAA GGANATTGAA GAAGGGACGT 
TTAGGCCTCC TATGACCGTT ACTAACGCCG TTAACAGTAG TTACCCTCTG 
GACGCTCGTA GTGTTACCAA CTCNTNTAGG ANTGACANNN AAANAGGCAG 
GGTCANCGGT TCNAAGGTCA AGCCANTTGA TGATGTNNNC AAAAACAAGG 
NCCNCNTTNC ANNNNGGCTC NCCTGN

AT2G47640.1

Model type: Protein coding
Short Description: Small nuclear ribonucleoprotein family protein
Computational Description: Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.1); Has 791 Blast hits to 791 proteins in 229 species: Archae - 2; Bacteria - 0; Metazoa - 328; Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47640.2

Model type: Protein coding
Short Description: Small nuclear ribonucleoprotein family protein
Computational Description: Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.2); Has 797 Blast hits to 797 proteins in 230 species: Archae - 2; Bacteria - 0; Metazoa - 331; Fungi - 182; Plants - 143; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47640.3

Model type: Protein coding
Short Description: Small nuclear ribonucleoprotein family protein
Computational Description: Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47640.4

Model type: Protein coding
Short Description: Small nuclear ribonucleoprotein family protein
Computational Description: Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.1); Has 791 Blast hits to 791 proteins in 229 species: Archae - 2; Bacteria - 0; Metazoa - 328; Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link: InterPro Scan - TAIR