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Mutant Lines
13-5406-1

13-5406-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 520474 [Map]; Strand: c
- AT2G02080.1 - [+] show detail - indeterminate(ID)-domain 4
  Distance: 0; Region: exon3 (CDS)
- AT2G02080.2 - [+] show detail - indeterminate(ID)-domain 4
  Distance: 0; Region: exon3 (CDS)

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATAGCC AGTCCGGAGC CAACGTGCGT TCACCATGAC 
CCGTCACGTG CTCTCGGAGA CCTCACCGGA ATCAAGAAGC ATTATTACCG 
TAAACATGGC GAAAAGAAGT GGAAATGTGA GAAATGTTCT AAGCGTTACG 
CNTGTTCAAT CGGATTGGAA AGCGCACTCT AAGACTTGTG GTACTAAAGA 
GTATCGATGT GACTGTGGTA CCATCTTCTC TAGGTAACTA ATCTCTATCC 
ATTTCATTTA AATCATTTGT TCGTATTTGA TTTAAGTGAT GAAACGTATA 
ATATATGTGT CAGTGTGTGT GGCATCTAGA TATACCTTCT TATCTTGGTA 
AAGTATAACA ATTAATGGAC CACCTTTATT TTGTATTACA ATGAAAAACT 
ATTCTAAGTA AAAGCTGCAT TCAACACTGC ATGTAAAACT TAGCTTATTT

3 prime edge [+] show sequence

Chromosome: 2; Position: 520519 [Map]; Strand: c
- AT2G02080.1 - [+] show detail - indeterminate(ID)-domain 4
  Distance: 0; Region: exon3 (CDS)
- AT2G02080.2 - [+] show detail - indeterminate(ID)-domain 4
  Distance: 0; Region: exon3 (CDS)

CTCCGGACAA AGATACACTT TCCTCTTCAC TTCTTTGGTT GATTTTTGTT 
TCAGCTTCCA TGGGAGATTG TGTCCTCTTC GGTGAAGCTG TAGATTTTGT 
TCTCTTTGAA ACCCTTTGTT ACATACATCG CATATGAATC TGTTTGTAGC 
CATTAGTGTC TTTGGAGATA ATGCTACCAC TTCCGCATCA GGATCTGTTT 
CATATAATTA AAGAATTTAA TCATTTAAAT TAAGTCACCA ATACCCAAAA 
TGTCAATCTA TGTAGACTAT ATCGAAAAAA ATGATACACA CACATGTAAA 
CATAAATCAA ATGACATATA CACGTATAAA CATATAAGAT ATACTGGCCT 
GTCAATATAT ATGAAATCTT GATACTAGCT AGATATACAA AACAAAATAG 
AACAAATGAT TAGGGTTCTT TTTCTTCTTG TTATTATCTT AAAGCT

AT2G02080.1

Model type: Protein coding
Short Description: indeterminate(ID)-domain 4
Computational Description: indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G14580.2); Has 51298 Blast hits to 20221 proteins in 333 species: Archae - 2; Bacteria - 165; Metazoa - 48118; Fungi - 358; Plants - 855; Viruses - 7; Other Eukaryotes - 1793 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G02080.2

Model type: Protein coding
Short Description: indeterminate(ID)-domain 4
Computational Description: indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G14580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR