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13-5390-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5168242 [Map]; Strand: w
      • AT1G14990.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G14990.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G15000.1 - [+] show detail - serine carboxypeptidase-like 50
        Distance: -354; Region: promoter
    Flanking Genome Sequence: 13-5390-1 - 5-prime edge 
    CTTTCAGGTA TTATATCGAA CACCTTGTGA TCACTTTACC AAACAGAGAT 
    GACGAGTAGA AGAAGCATCT CACGAAATTT GCAATTGACA AATTGTAAAC 
    GCCTTGTATT GTCCAACTTT TTATGGGCCT ATCTGACCTT TTTCTCTTTT 
    CGGCCCAATA AAACTTTTAG ATTTTATTTC TTTTGGCAAC AATAAATTTA 
    AAATAATATA CATTATGGAA AATCATCTAC AAACAAAAAC CTTTAAATTA 
    AAAAACTCAC ATGTTAATGC AATTAGGTTA GTAAGCAAGC ACGTCTTGAC 
    AAAAATGTTA TTGTTACACA TTTAAAAATT CACATGTTAT ACAAGACAAA 
    ACATAAACGT AATGTTTTGC AGTCAAATAA TGAAATAAAT GAAATAATAC 
    AAAGGGATCT TTATGTAAAG GCGTCACCAA TTAGTGGAAA TAATGGAGCA 
    AGCCACTACA CTCTTCATAT TGCTTTCCAC TCTCCTCCTC GCCGTCTCCG 
    TTGAGTCTCC TCAGCCACCG CTATTTCCCG ATGAAGCTCT CCCCACTAAA 
    TCTGGCTACC TCCCGGTTAA ACCCGCACCC GGCTCGTCCA TGTTCTATGC 
    CTTCTACGAA GCCCAAGAGC CAACCACACC TTTTCCTGAC ACTCCGCTCC 
    TCGTTTGGCT CCAANGNGGG CCAGGCTGCT CTTCAATGAT TGGCAACTTT 
    TACG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5168126 [Map]; Strand: w
      • AT1G14990.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT1G14990.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT1G15000.1 - [+] show detail - serine carboxypeptidase-like 50
        Distance: -470; Region: promoter
    Flanking Genome Sequence: 13-5390-1 - 3-prime edge 
    CCTGAAAGAG TTTCCGAAGG TGTGAAGATG ATGATCTTGG ATGTTTGCTC 
    AGAGGTTATA AAGATCCAGA AGCTACGACG GGCTGTCTCT TACGCCGGAT 
    TCTACTGCTT CACTGCTGCC CTCACATTCT TCTATACAAA CAACACGTAA 
    TGTCTTTCGT CCGATCTCAG TTTGCTTCTT TTGGTTGTTC TTTCTTTTCA 
    ATATCGGAAT T

AT1G14990.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14990.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR

AT1G15000.1

Model type
Protein coding
Short Description
serine carboxypeptidase-like 50
Computational Description
serine carboxypeptidase-like 50 (scpl50); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 47 (TAIR:AT5G22980.1); Has 3616 Blast hits to 3489 proteins in 407 species: Archae - 0; Bacteria - 288; Metazoa - 703; Fungi - 860; Plants - 1378; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).
Link
InterPro Scan - TAIR