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13-5363-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19502348 [Map]; Strand: c
      • AT2G47510.2 - [+] show detail - fumarase 1
        Distance: 102; Region: intergenic
      • AT2G47520.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 454; Region: intergenic
    Flanking Genome Sequence: 13-5363-1 - 5-prime edge 
    TCTAAAGGTG TGTCATGTTT GTATTCTTTT ACACCTTTAC GCTACGTCAT 
    AAGCCTCGTT CAATTTGAGG TCTAACAAAA GCCCAGTAAA GCCAATCCAA 
    TTTTAATCGG CCCAAAGAGT AATAAATCCT AGCGCCAATA AGGCTCGTAC 
    CGTGAGCCCA CCGAGGAGAG AGAGACTAAC GAAACTCAGA AATTCTTCTC 
    GCTGAGTACT CACTCTCTTA TTCAACACAA AAAAAAAATN GATNCNTAAA 
    NAAAATNATA GTTNGGCCGT AANATNAAAA ACAANGTNGC CCTCCCAANA 
    AAATTTNAAT NGTTTCNGGA TTNGCTNATT TTTATTATAA CCTAAATAAA 
    ANCNTCAAAA AAATAANGGT NCTTGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19502464 [Map]; Strand: c
      • AT2G47510.2 - [+] show detail - fumarase 1
        Distance: 218; Region: intergenic
      • AT2G47520.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 338; Region: intergenic
    Flanking Genome Sequence: 13-5363-1 - 3-prime edge 
    CCTTTAGACG ATGAAACCAT GAGCGTCCTC AAGCCAACAG ATTCCGCTCC 
    GCCGCCGCCA CAACCGCGGT TTCCCCGAGA CTGTCTCCAT GATTACATTT 
    AATGTTCTTT TTGAAAGAAA AAAAATCTCT ATACTTAACA TATTAAATTT 
    TTTTTTTTTT TTTTTTNNNN NNAAAAAANT TGGGGGGGGN AAAAAAAAAN 
    NNAANNNNAA NTTTAAANCT AAANNNAAAN NNNTTTNGGG NNNTTTTTTT 
    TNAAAAAAAA AAAAAAAAAT GGGGGGNAAA ANTNNAANNN GGGGGNTTNG 
    GGGGNNNNTT TTTNNNAAAN TTTTTTTTNN AANNCCCNAA AANNNNTTTT 
    AAAAAAAANN NNNNNNNCCC CNNGGGGGGG GNAAANNNCN GGGGGNNNNN 
    AANA

AT2G47510.2

Model type
Protein coding
Short Description
fumarase 1
Curator Summary
Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle.
Computational Description
fumarase 1 (FUM1); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: response to oxidative stress, response to salt stress, pollen tube development; LOCATED IN: mitochondrion; EXPRESSED IN: cotyledon, male gametophyte, guard cell, root; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUMARASE 2 (TAIR:AT5G50950.2); Has 19736 Blast hits to 19727 proteins in 2822 species: Archae - 389; Bacteria - 12991; Metazoa - 306; Fungi - 295; Plants - 106; Viruses - 0; Other Eukaryotes - 5649 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47520.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 (HRE2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 6285 Blast hits to 5826 proteins in 255 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6266; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR