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13-4644-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5433775 [Map]; Strand: c
      • AT4G08540.1 - [+] show detail - DNA-directed RNA polymerase II protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4644-1 - 5-prime edge 
    GTGAAACCTA TGATTAACGC AAGCAGTACA GATACAAGGA CGATTAGTGT 
    TGTCGCAAAT AGCGCAGTTA CTGGATCGTT TTGTCATCGT TTATTCCAAA 
    ACCATATTCT CCGGTGAGAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5433855 [Map]; Strand: c
      • AT4G08540.1 - [+] show detail - DNA-directed RNA polymerase II protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-4644-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCACAAA 
    ATCTCTCATA AAGTTTCGAT TTTTTTCGAA ACCCTCATAG TTTTTTTTCC 
    TTCTATAGAT TGATTGAGTA TAACACTTTG TTGAAGTCAC TTCAAAACTC 
    GAAGAGATTC ATTATTATCA AGATTCAATG AGCCTATTGG AATCTAAGGT 
    TTGGTTTTAA AGACTCATCT TTTTTTTTGT TCTGNGAAGT ATACAGTTTC 
    ATGTTTTCGT TATTAGGGTA AAGCTGATGA TCANAANAAT NGGAGATNGA 
    TTCAAAACGA NAANATTTCG AAGTTGAANA ANAAGCT

AT4G08540.1

Model type
Protein coding
Short Description
DNA-directed RNA polymerase II protein
Computational Description
DNA-directed RNA polymerase II protein; BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase II protein (TAIR:AT1G77890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR