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13-3878-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14751344 [Map]; Strand: w
      • AT3G42660.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3878-1 - 3-prime edge 
    ATCCGAAGAA GATGAAGTGA CGAAATGTTC GGCTTTGTGG TCCCAGAGGA 
    TAGAGCAGAA GGCGGCGCTT CCGCCGACTT TATGGGCTTC CCGGAGCTTT 
    AGAGATCGTG ATTTCATCGG AGATGTTGAT TGTTTTGGGT GGTTCTAGGG 
    TTTTAGTTCT ATCTGATTGA TTTGGGCATT TTTAGTATTA ACCTCGATTT 
    TGGCGCCAGT TTCAGAGTGG GACACGCGGG ATATTATTTA CCATTTTCAC 
    TATTTTTTGT CTTTAAAAAA TGTGGTTAAA AGTTGGAAAT TTACAAAACC 
    TAAACTTCTC TCGCGCTTTT CTTTAAAGAA AACTTTCTAG TGTAGGTGGG 
    TTTTCTTTCC AGCATGGACA GAACTAGGCA TGCATGCAGT TTTGATGCGA 
    CCCGATTCTA TTGATCCAAA CCAAACCGAT TTTTCTTTTT ACAAATTGGN 
    TTTGGTTTAA TATTTGGTTC AATTCGGANA GATAAAGATT TATGTTCNAA 
    AATCTGATCT GACTCGGNCC GACATGATNA ACTAATTGGG TNTCCANTNT 
    CTAAATAACA TTTTTGAAGN NCATTTTANA AAAGCTANTN NGGTCANAAT 
    TANTNTACTT ANNTGACCCN GAAAGNTTCC NNNNNGGNCC NNNNNNNNCC 
    CNTNCNNNT

AT3G42660.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein of unknown function DUF3639 (InterPro:IPR022100), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 41589 Blast hits to 20655 proteins in 706 species: Archae - 66; Bacteria - 8583; Metazoa - 14223; Fungi - 8894; Plants - 4578; Viruses - 3; Other Eukaryotes - 5242 (source: NCBI BLink).
Link
InterPro Scan - TAIR