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13-3492-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3483319 [Map]; Strand: c
      • AT1G10550.1 - [+] show detail - xyloglucan:xyloglucosyl transferase 33
        Distance: -2331; Region: intergenic
      • AT1G10560.1 - [+] show detail - plant U-box 18
        Distance: -1261; Region: intergenic
    Flanking Genome Sequence: 13-3492-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGTTA GAAGATGATG AAATGGACCA GTTATAGCTA 
    GCGCGCCAGT ACTAGAAACG GTGTTGTACT TTCTGGAGAA GAATGGTAAA 
    GTATCAGATT CAATACACCA ACACGGCAAC ACTCAAGATG CAGCCTTGTT 
    TTTGGTAAAT ACAAAACCGA AACTTGGAGA GAATGATCAG AAAGAAATGA 
    AATGATGGTA ATTGATCCAA TCTGAGCTTT TACCCTATTC CATTGAAAAC 
    CCTTTTTCTT TTGTGAAAAA GGTTTGTATC GGAAAAGAAA AAATAAAGGT 
    TTGTTAAAAT TACTTATCTG AGCAACAACT CGAGTCCGGT CACCGGTGAA 
    GCTGAACTTT GGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3483343 [Map]; Strand: c
      • AT1G10550.1 - [+] show detail - xyloglucan:xyloglucosyl transferase 33
        Distance: -2355; Region: intergenic
      • AT1G10560.1 - [+] show detail - plant U-box 18
        Distance: -1237; Region: intergenic
    Flanking Genome Sequence: 13-3492-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACGAAACTAT GATATTCCCA TGCATGATTC CAAGTAAATG CTCAAATGTG 
    AAAAAAAAAT ATGAAAGCGA GCTTATATCA AACCGTTGAC TTTGCCTCTG 
    AATAATTGGT TCTTGCAATT GTTAAAATAT GGTCCATTAA TAACGCAACC 
    GGCCATTGTT CCCGAATATT ATAACAACTT CTTCTCACNA TTGACTATCC 
    TAAATTGATG AGTTAAAGAG TACCTGGAAA TATCCTTCTT TAAAGCATAT 
    CAGGTAACAA ACCTAATAAN ATTCCAAAAA AATATATTAT ATTTTCGCAA 
    TACTCCACCA AAAATGAAGG NGAANAGGCT TCCAGTGACC ACCACATATC 
    GGCATGGCTT CNAGTTTGAC CANAGGTTTT GGATAATGCC AAAAATAATG 
    ATTAANGGTT ATCTTTGCAC AAGGACTACN AACAAANATN GTCTTNTAGT 
    CTTNTACAAT TCAAACAAGG GCANAAAAAT CGTTTCTCAT GNGTTTTATT 
    ATATAAATCT CCATGGNGAA TGACCCACCC ATTCAGCATC AACGCCAAGG 
    TCTANCTNTT GTNTGTGCCC ATTCTAAACA GATTTCTAAA ATTATCACGT 
    AAAATCCTAC AATNGNGTGA AANGATGATT ANTTTTAANC CCCCAAAAAN 
    TTTTTTTTCA ANGGACNTAN TANTTCNATN GANTANCNTA NNCNAAAAGN 
    AATNCNTGTT TTTTTTNCNN AAATNTTTGG GGAAGCC

AT1G10550.1

Model type
Protein coding
Short Description
xyloglucan:xyloglucosyl transferase 33
Curator Summary
Encodes a membrane-localized protein that is predicted to function during cell wall modification.Overexpression of XTH33 results in abnormal cell morphology. It's expression is under epigenetic control by ATX1.
Computational Description
xyloglucan:xyloglucosyl transferase 33 (XTH33); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1); Has 2022 Blast hits to 2008 proteins in 287 species: Archae - 0; Bacteria - 257; Metazoa - 0; Fungi - 351; Plants - 1343; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10560.1

Model type
Protein coding
Short Description
plant U-box 18
Curator Summary
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational Description
plant U-box 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1); Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0; Bacteria - 22; Metazoa - 252; Fungi - 338; Plants - 2172; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR