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13-3153-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 670644 [Map]; Strand: w
      • AT2G02498.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 440; Region: intergenic
      • AT2G02500.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 234; Region: intergenic
    Flanking Genome Sequence: 13-3153-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG GGGAGTTCTT CTCGCTTCCT CTTTGTTCCT 
    CGTTCTCTCT ATTTCTTCTT CATCTCATGC GAGTGTATTT TGACAGCCCT 
    ACTTGAACAT AACTTGAGAT ATAAGTTATG ATATATTTAG GGGTTATTTA 
    AATATAAGTT TTAATAAACA TCATTAACAA ACTAATCTCT TGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 670648 [Map]; Strand: w
      • AT2G02498.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 444; Region: intergenic
      • AT2G02500.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 230; Region: intergenic
    Flanking Genome Sequence: 13-3153-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CTACTCCACT GTAAGATGAA AAGTCAGAAT CATACATATA TGATTTTAAA 
    ATAAAAAGTA TTTGGATTCA TCTTTAGGGG TAAACTTTTG TATTCACCCT 
    CTTTAGTTTA AGCCAACCAT TATGCCATGC CATATATTAA TTAAGGAAAC 
    AAAATCTATA TACTTTAAAC TAAATAAAGT TAAATTCATT TACCCTGTAG 
    GTACAAGGTT AAATTCATTA ACATATGGTT AAATTTCTTA TCGGATTTTA 
    GTTTAGGGTT TTATTTACTA GAAAAGATTA TTCATGGTTT AAAAATGGAT 
    C

AT2G02498.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02490.1); Has 97 Blast hits to 69 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 10; Plants - 45; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02500.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity).
Computational Description
ISPD; FUNCTIONS IN: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; INVOLVED IN: response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (InterPro:IPR001228), 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site (InterPro:IPR018294); Has 6821 Blast hits to 6815 proteins in 2244 species: Archae - 30; Bacteria - 4964; Metazoa - 52; Fungi - 6; Plants - 61; Viruses - 0; Other Eukaryotes - 1708 (source: NCBI BLink).
Link
InterPro Scan - TAIR