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13-3090-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16386868 [Map]; Strand: c
      • AT4G34230.2 - [+] show detail - cinnamyl alcohol dehydrogenase 5
        Distance: 0; Region: exon5 (3UTR)
      • AT4G34230.1 - [+] show detail - cinnamyl alcohol dehydrogenase 5
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 13-3090-1 - 5-prime edge 
    GCTNNAGNGG ACCTNGANNG CNTTANGCCT TTTNNGTGAC ANATNGGTTT 
    ATTNAGANNN ATNTNTNCTT CNTCTAAGTT NAGGTNCTCA CCTAATNTGN 
    TTGGAGCAGA NNATATANCA ATTANCGGGT CCGGGCCGTC NANNACANAG 
    GGGCAAAAGA GANAATGATA NNGGANNGCT AATCATGAAT CATATGATAT 
    ATGTGTTAAA ATATTTGCCC TTATGTCGGG TTTGAGTCTT ACTATATGAA 
    ACACAATTCT TCGGACTAAA AACAGTGACT GAAAGCGAAA TCCAACTACA 
    AAGNACGANT NGCNTATTAT ATNTTANNNG ANAATATTNG TAAGCTGCGG 
    TATAAGAAAC TAGANGCGAG CGTATGGNCC TNGAATCNTT CACNANACCA 
    TGCNNCGNGG NCGANNNNNT GGNGGCCCAA GNGANCGGCA CGNTACGGGN 
    NGACNAAGGA GNGNGNCGNN CGNGGGCGGC NGNACNGCGC GGGAAACNNG 
    GGAATNNACA CNGGGGGGGG CGAAGNGGNG GAGGGNAGTG GGGGGGGGNT 
    NNGNCGGGCG AGGANNGNGN GNNACCACGG ACANCCGCNA CGGCCGANAC 
    GAGAAGAAAA NNCGGGGGGG GNAACCGACA NNNAGCGNGN NNGGGNNNGN 
    NGTATNNGNN NNNNAGNGAN GAGAGCGTCC CCNNNGGGGA AACNANGNTA 
    NCNNTGGANC NCCGCCGGNG NAANNCAGCG NNGANGGANA NGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16386981 [Map]; Strand: c
      • AT4G34230.2 - [+] show detail - cinnamyl alcohol dehydrogenase 5
        Distance: 0; Region: exon5 (CDS)
      • AT4G34230.1 - [+] show detail - cinnamyl alcohol dehydrogenase 5
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 13-3090-1 - 3-prime edge 
    ACGACGAACC TATAACGCAC ATCGTTCTTC TCGAGTCTCT CAAACGCAGT 
    GTTAACATAA TCCATCTTCA CAACTTCGAT AATCGAACTC AAACCCTTTT 
    CTTTACAGAA CTCAAGCATC TCCTCTGTCT CCTTCATGCT CCCTATGAAG 
    CTCCCCGTTA TCACTTTCCT CCCTAATCAA ACCATCATCA TCATCATTCC 
    CAATTAGTAA TCCTCTAAAT CACAATCATT AAGAAAGGGT TAACTTTTTT 
    AATAAGGGAC TCACCAAGCA TAAGCAGAGG AGTGAGAAAC TGTAATGGAT 
    TGTTGATAAC TCCCATGAGA ATGAGTTTAC CATCAAGCT

AT4G34230.1

Model type
Protein coding
Short Description
cinnamyl alcohol dehydrogenase 5
Curator Summary
Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.
Computational Description
cinnamyl alcohol dehydrogenase 5 (CAD5); CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT3G19450.1); Has 41203 Blast hits to 41171 proteins in 3032 species: Archae - 764; Bacteria - 27799; Metazoa - 1384; Fungi - 3121; Plants - 2810; Viruses - 3; Other Eukaryotes - 5322 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34230.2

Model type
Protein coding
Short Description
cinnamyl alcohol dehydrogenase 5
Curator Summary
Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.
Computational Description
cinnamyl alcohol dehydrogenase 5 (CAD5); CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT3G19450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR