1. Home
  2. Mutant Lines
  3. 13-2819-1

13-2819-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7227268 [Map]; Strand: c
      • AT2G16670.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-2819-1 - 5-prime edge 
    GGNGACGNCA GNGGGAACCN NNGTACTTNC TACCCCTNGA GGACGCCGGA 
    TTCACATCAC CGGGGCNANA GGACAAGAAT TATNANCTGT GGCATANTNN 
    GATGGGNCAC CCANCTGCCA NAGTTGNTAG TTTGATACCC GAGAGTTCTA 
    TTTCTGTTTC TTCTACACAT TTGAATAAGG CATGTGATGT TTGTCATCGT 
    GCTAAGCAAA CAAGAAATTC TTTTCCTTTG AGTATCAATA AAACTTTGCG 
    AATTTTTGAG TTAATTCACT GTGATTTGTG GGGGCCTTAT CGCACACCGT 
    CACATACCAG TGCTCGCTAT TTTCTAACTA TAGTTGATGA TTACTCAAGA 
    GGGGTTTGGT TGTACTTGTT GAACTATAAG AGTGAGGCGC CATGTCACTT 
    GAAGAATTTC TTTGCAATGA CAGACAGACA GTTCAATGTC AAGATAAAGA 
    CGGTGAGAAG CGACAACGGA ACAGAATTTC TGTGTTTGAC TAAATTTTTC 
    CAGGAACAAG GAGTTATTCA TGAGCGATCT TGTGTGGCTA CTCCAGAGCG 
    AANTGGCCGA GTTGAGAGAA ACATATACAT TTACTTAATG TTGCAAGGGC 
    GTTGAGGTTT NAAGCCAATC TACCAATTCA NNTTTTGGGG GAGAGTGTGN 
    NGTNAATGCN NNNTANNTTN TTNATCNGAC TCCAGCNNNG GNGGNNAANN 
    ACNNGACCNN CATNNGANCG GNNGNNTAAN NAANNAGCCN AGTTNAANNN 
    TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7227328 [Map]; Strand: c
      • AT2G16670.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-2819-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AACACGCCTA CCAGCTCCCA TCACCATCCT CGAAGTGCGG TCCTGCACGA 
    CAAGGAAGCG ATCAGACATT TGCAAAACAC ATCGATTCTC ATCCATCAAT 
    TGTCCAATTG AGATTAAATC GGACTGAAAT TCTTCAACAT AAAATACAGA 
    TATCATAACC AAATTTGACC CAAGTCGAAC TGTTCCTTCT TTAACCGAAA 
    TTCGTTCCCT ACCATCAGCT AGAACTATCA AAATTGGGTC CATATCTCTA 
    ACATTCATCA ATATATCAAA TTTTCCCGTC AAATGATGAG AGGCTCCAGT 
    GTCCATTATC CAAGAGGGTG AATTAAACTT ACCGGTTAGC TTTTCAGTTG 
    CAGCATCTTT CCCGGAGTTG AGAATGCTTT TGATGGTTCT CCACTGACTG 
    TCGGTGAGAC CATTCACACC ATCACGGTCT TCGTCAGTGA GAGCATAGTT 
    AGCTTGCTCA TATGTGTCGT GGTTTGGAAC CGTCACACGA TTGGCATAGG 
    CAGCTGCACC ACGTCCACGC CCTCCGCTCG AATTGGTTCC TCCACGACCT 
    CGAGTTTGCA ATGATCTGCT CCGTGGCCTA TCTCCCCACC ACTCCGGATA 
    GCCAATGACG GCATAACAGC TTTCGGATGC ATGACCACTG CGATTACAAT 
    GNTTACNCAC CATACTCTTA TCTTTTTCAT CACCTNTTCC TTGATAAAGC 
    TNCCANNCCG GGCCGNNNAC CACCCGG

AT2G16670.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.2e-190 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR