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13-2795-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 214337 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -640; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -640; Region: promoter
    Flanking Genome Sequence: 13-2795-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACATGATAAT TTAATGTAAT GGAGAAGACA AGTATATATT TGCATGGTTC 
    GTGCGTTAGA CAGACGTGCG TCCCATTTTC TCGTTGTACA CGCATTTTAC 
    GCATTTACTT AATCTATGGG TCATTATTTT AGTGTACTAT GGACTATGAT 
    ATTATACAAT ATTAATAAGT TTCAACATAT ACACCTTTAT TTACTTGTTG 
    AGATATGTTC CATATACTTA TATTTTAAAA ATAAACTTAA TATAAGTATG 
    TCTAACATAT TCAACAAATT TTAGTTAATA GAAAGTGAAC TAAGGAGTAT 
    AGACAATGCA TACATATAAC TAGGTAGCAA AAAATTAGTA ATTATATGGG 
    TTGAAAAATT AAATGAAAGT AAGAAAAATG TTACATCAAA AGATATAAAT 
    GCATACCATT CATTACATTA AAAGATTGAA GGTGAAAAAG ATTAAAGCCA 
    TCAACAGTTT CGTATTCTTG CCCATCACGA TACCGTGAAA GGGTTGATCG 
    AGAAACCCTA GCTACGAATA AGAAGTAAGG CATTTCTTAT AGTCGACGAA 
    ACAATAATAA AGTAGTTTTG CATTGATGAG ACATTGCCTT CTTGCCCATG 
    CAGCTATGAA CCTAAAATGT TTGCACAAAC TTANAAATCA AATAAATGTC 
    ATCGCTTTCC TTGACAGACC CGACCATANA AATGATTGGA AACAAAATTA 
    ATANAGTTTT GATGCTACCC TTNATCATTT AGTNCTCTTT TANNNGANAT 
    GGNTNG

AT4G00460.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 292 Blast hits to 291 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR