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13-2139-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24595882 [Map]; Strand: w
      • AT1G66060.1 - [+] show detail - Family of unknown function (DUF577)
        Distance: -338; Region: promoter
      • AT1G66070.2 - [+] show detail - Translation initiation factor eIF3 subunit
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 13-2139-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TTGTCTATAA GAAATTCAAC CCCCAAAGAG 
    ATTTAATCAG ATCAATGTCA ATAATAAATT TATACGGACA CGTTTAAGTA 
    TAGCGTTTTT CAACCAACAA ATAGAACCAA AAACATGACT CTAGAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24595880 [Map]; Strand: w
      • AT1G66060.1 - [+] show detail - Family of unknown function (DUF577)
        Distance: -336; Region: promoter
      • AT1G66070.2 - [+] show detail - Translation initiation factor eIF3 subunit
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 13-2139-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCAGAC 
    ATGAGTGCGT TTCATGTTGT CCAATCTTTA AATACTGCCT CTTGAGTAAG 
    AGAGAAAATG TTGATTCGTT ACAATTCGCT AATGTTAGTA GTAAACCTTG 
    AAACACGCTA ATATCATCAT GACTTTACAT TAGCTAATAA CATAAAGATG 
    TGAATGGGAA TGACATAAAG AATT

AT1G66060.1

Model type
Protein coding
Short Description
Family of unknown function (DUF577)
Computational Description
Family of unknown function (DUF577); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF577) (TAIR:AT1G66000.1); Has 82 Blast hits to 52 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66070.2

Model type
Protein coding
Short Description
Translation initiation factor eIF3 subunit
Computational Description
Translation initiation factor eIF3 subunit; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor eIF3 subunit (InterPro:IPR013906); BEST Arabidopsis thaliana protein match is: Translation initiation factor eIF3 subunit (TAIR:AT5G37475.1).
Link
InterPro Scan - TAIR