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13-2072-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3667404 [Map]; Strand: c
      • AT1G10970.1 - [+] show detail - zinc transporter 4 precursor
        Distance: -265; Region: promoter
      • AT1G10980.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 13-2072-1 - 5-prime edge 
    GTNATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAA TAATCTTCTG CAGTAGACTT GACTTAATCG 
    GATTTTCTGT TTCATGAACT TGTTGGTAGT GTGGAACAAA TGGGAAAATG 
    AATATTTTTG GAACAAATTG ATTTTCTGTT TCATATTAAG TTAAATCATT 
    CTGTTTCCAC CTGAAATAAA TTGTTTTCCA AAAATCACTC CGTTTATTAT 
    GTTTTTGTTT TTAAGAAATA AAAGTGAGAA AACAGAATAA CGCGAAAATG 
    TCGACATATT TGGCTAAGTA TAGACAAGAT TGGGAAGCTC TGTTTAGTTA 
    TGCGTCAGTC TCTCATCAGT GTTCAACTGC CACGGAGCGA ACCGATTCCT 
    AATTGCAACG TCCCGAGTCC ATAGAATGTC GACACTCTTT CACTCTTTCT 
    CCAAGTTGCC TCCTTTGAGT CCTTTCTCAT ATTTTATAGA CTCACTTTCT 
    GTTTCTTGAT CCCGAGGAAG AAGAAGAATA AACTCTTGTT CCCATGATCT 
    TCGTCGATGT TAGTACCTTG AGATTCGATT CGTCTCTCCG ATTCTTTATA 
    ATCGGAATTT ATTGGTTTGT GGAATCTGAT TTTGGGTTCT CTTCTATTGC 
    TCTTATAGGT TCTTTGGAAA TTGTTTCCTC TATACTCGTT TGGATCAGGA 
    AGAGACTCTC TCTCAGGTNT TTCATCGAAC ACTTACCCTA CAATTTANTG 
    AAATTTCTGT GTGATGNANA ATTACCANCC CGGGCCGNNN ACCACNCGGC 
    CCCNNNAN

AT1G10970.1

Model type
Protein coding
Short Description
zinc transporter 4 precursor
Curator Summary
A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.
Computational Description
zinc transporter 4 precursor (ZIP4); CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1); Has 2241 Blast hits to 2085 proteins in 351 species: Archae - 0; Bacteria - 278; Metazoa - 580; Fungi - 588; Plants - 521; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10980.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G61670.1); Has 670 Blast hits to 669 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 291; Fungi - 146; Plants - 175; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR