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13-1451-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25423147 [Map]; Strand: w
      • AT5G63490.1 - [+] show detail - CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
        Distance: -963; Region: promoter
      • AT5G63500.1 - [+] show detail - Protein of unknown function (DUF 3339)
        Distance: -260; Region: promoter
      • AT5G63510.2 - [+] show detail - gamma carbonic anhydrase like 1
        Distance: -820; Region: promoter
      • AT5G63510.1 - [+] show detail - gamma carbonic anhydrase like 1
        Distance: -837; Region: promoter
    Flanking Genome Sequence: 13-1451-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAACGGT ATCAATAACC AAAGCTACTT TAGCTTCATG 
    GATATGGACC AAACATAAGT TATGAATTAT AATACTGGGC CGAAAACTCA 
    AAGCCCATAT GTATAAGATT CACGTTGTTC GAAATCTTTT CCCACTAAAC 
    AATAATTTTA TAATTAAACC TAAAGTATGT CCACGTGGAT ACCATCAATT 
    GGTTCACCAC AGCATTAGCT TTCACATCAC ACGAGAAGCT

AT5G63490.1

Model type
Protein coding
Short Description
CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
Computational Description
CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (TAIR:AT5G50530.1); Has 8040 Blast hits to 6478 proteins in 1504 species: Archae - 1004; Bacteria - 5599; Metazoa - 7; Fungi - 119; Plants - 199; Viruses - 0; Other Eukaryotes - 1112 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63500.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF 3339)
Computational Description
Protein of unknown function (DUF 3339); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT3G48660.1); Has 274 Blast hits to 269 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63510.1

Model type
Protein coding
Short Description
gamma carbonic anhydrase like 1
Curator Summary
Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.
Computational Description
gamma carbonic anhydrase like 1 (GAMMA CAL1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: response to salt stress, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase-like 2 (TAIR:AT3G48680.1); Has 6342 Blast hits to 6315 proteins in 1761 species: Archae - 154; Bacteria - 4172; Metazoa - 13; Fungi - 12; Plants - 165; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63510.2

Model type
Protein coding
Short Description
gamma carbonic anhydrase like 1
Curator Summary
Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.
Computational Description
gamma carbonic anhydrase like 1 (GAMMA CAL1); CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase-like 2 (TAIR:AT3G48680.1).
Link
InterPro Scan - TAIR