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Mutant Lines
13-0636-1

13-0636-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 19058944 [Map]; Strand: c
- AT2G46430.2 - [+] show detail - cyclic nucleotide gated channel 3
  Distance: 0; Region: exon3 (CDS)
- AT2G46430.1 - [+] show detail - cyclic nucleotide gated channel 3
  Distance: 0; Region: exon2 (CDS)

GCCGAAACCA CTAGAAGAAG GAGTGATGAA ACCGGTATGA AACTGAAACA 
GCATGTGAAC CACATAGAAA GCGTCGATGA AAGTGCAGGA AAACGCAAGC 
GATTGTCTGG AGTTTCTTGT CTAGATTAAG ACAAAATCGC TCGGGCTTCA 
CATAGGGGAT ATAGAAAAAC AGAGGATCAA AGGCTAAAGC CACAACAGAG 
AGAAGCAAGA AAATCTTGTT CCAGCTTTGA AGATATGAAT CGTTCGGATT 
CATCACTCTT AGTATCTTCT TCTTCTTATT ATTTTCTTTA TTCTTATTTG 
AATGAACGCT TAAGGGCCGC TTAAAGTTTC TGATTTTCTC TGACCCCTTT 
TCGAAGCT

3 prime edge [+] show sequence

Chromosome: 2; Position: 19059060 [Map]; Strand: c
- AT2G46430.2 - [+] show detail - cyclic nucleotide gated channel 3
  Distance: 0; Region: exon3 (CDS)
- AT2G46430.1 - [+] show detail - cyclic nucleotide gated channel 3
  Distance: 0; Region: exon2 (CDS)

GTTTCGGCAG AGGAGAGCTT AATGAGAAAC ATAAAGATAT CGCTTTAAGA 
TACCTCGGCT CATACTTTCT AATCGATCTT CTTTCGATTC TCCCTATTCC 
TCAGGTAACA ATGTTTTCTC AAATCTGCTT TGCAAGATCT TGGTTGCATA 
TCTAATGAAT ATGAAATACT ATTTTTCTTT GCAATGACAG GTAGTTGTTC 
TAGCGATAGT TCCAAGGATG AGACGACCCG CGTCGCTAGT AGCAAAAGAG 
CTACTGAAAT GGGTAATCTT TTGCCAATAT GTTCCGAGGA TAGCGAGAAT 
CTATCCGCTT TTCAAGGAAG TAACAAGAAC TTCTGGTTTG GTAACTGAAA 
CTGCTTGGGC TGGTGCTGCT TTAAACCTAT TCCTCTACAT GTTAGCTAGC 
CACGTAAGAA AAGATTATTT TATTTGCTCG AATCATGTTA TGTTCGGGCG 
AAAGTAATGG TTAAAAAATT GCGAAATGGA CAGGTTTTTG GGTCTTTTTG 
GTACTTGATT TCGATAGAAA GGAAAGATAG ATGTTGGCGT GAGGCGTGTG 
CTAAGATACA GAATTGCACT CATGCATACT TATACTGTTC ACCAACAGGG 
GAAGACAATA GGTTATTTTT AAACGGTTCT TGTCCGTTGA TCGATCCCGA 
AGAAATCACA AACTCGACGG TTTTCAACTT TGGTATATTC GCTGATGCAT 
TGCAGTCTGG AGTTGNGGAG TCTANANATT TCCCTAANAA GTTTTCTACT 
GNTTCTGGGG GGGTCC

AT2G46430.1

Model type: Protein coding
Short Description: cyclic nucleotide gated channel 3
Curator Summary: cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance
Computational Description: cyclic nucleotide gated channel 3 (CNGC3); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 3204 Blast hits to 3078 proteins in 223 species: Archae - 0; Bacteria - 24; Metazoa - 1501; Fungi - 4; Plants - 972; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G46430.2

Model type: Protein coding
Short Description: cyclic nucleotide gated channel 3
Curator Summary: cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance
Computational Description: cyclic nucleotide gated channel 3 (CNGC3); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR