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13-0601-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11382550 [Map]; Strand: c
      • AT1G31772.1 - [+] show detail - Defensin-like (DEFL) family protein
        Distance: 3136; Region: intergenic
      • AT1G31780.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR01...
        Distance: -8677; Region: intergenic
    Flanking Genome Sequence: 13-0601-1 - 5-prime edge 
    ATCAAACATG ATATTACAAA TTTTAGCCAT TTGAACATTA AATTCTAAGT 
    TGCTTTCATA TTTGAAAAAA CAGAAAAATT CTGGCATCTT TAGTATTCAA 
    ATAATATATA GTCTTATATT CCGATTCATG CTAGTGGGTT ATATAACTCA 
    AAGAATGACA TTACATATAT TTGAATTACA TAAGAAATCA AAGAATCCGA 
    ATTTTTTTTT GGAGAACTTT CCACGCGAGG GAATCAAGAT GAGGAGGANG 
    GGCCCGAACT ATCATTTTAC ACCGGCCNTA AANAAAAANN NTTTCCCNAT 
    CATNTTAATT CCCNNNNTTN NNNATNTTTT NNTTNAATAT GGNCCANAAT 
    TTNTNTNGNN TNGGGNTNNN AAAAAAAATN NGGGGGGGNA AAAAAAAAAA 
    ANAAAANNNT NNNNNNAANN ANNNNNNNNA NNNNGAGANA AA

AT1G31772.1

Model type
Protein coding
Short Description
Defensin-like (DEFL) family protein
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G31780.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR