1. Home
  2. Mutant Lines
  3. 13-0546-1

13-0546-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25877470 [Map]; Strand: c
      • AT5G64735.1 - [+] show detail - pre-tRNA
        Distance: -2005; Region: intergenic
      • AT5G64740.1 - [+] show detail - cellulose synthase 6
        Distance: -3596; Region: intergenic
    Flanking Genome Sequence: 13-0546-1 - 5-prime edge
    GCTCANAGTA AGAATGTGNN TATTNCATAA CTCTNTGAAG AATAACATGG 
    NTATACAGTT ATAACCTTAA AATCGAAGAC AATGACGACA AAATCAAACT
    AAAAAACAAA GACAACAAGT AAAATAAAAC TACCCTTCTA TATTGGTAAT
    TTTGGTGACG TACATTTTTA CAAAAAAAAA TAGCTAGACT AATGTTAACA
    TAAAATTAAT GTTTATAATT CAAACTAATG ATGAAATGTA NANAAAAAAA
    TCTGNCNCCC ATTTGTACTA CAGAATGGAA AACATCATNA ATTTTCGAAA
    AAAATAATTA AAACTCTATG GAACGGGGAA TACCGGAATA ATCAAATTCT
    AATTACTTAT TAGCATTAAT AAATTGNGAA TGCCACGTGT CAAATAGTAA
    TGATCTTGNC GGGGGAGTCC ATAAAAGGAT GTTTTTAATT TTTTTCGTCC
    ATAAGGAGAA TTNAAGATTG GTAAAAATCA TNTTACTAAT TAAGNGTCAT
    AAATNGNTAC ATATNTACGG CAAAATTTAA ATTANTAGAA TTTTTTAAAA
    NACCAGTTNG GTCCANATGT TTNGAAAANC ATAGGGGCAG NAAANNGTTT
    TAANAATNCA NANGCCANTA ATTNTCTTAA TNNTTNTCCC TCANCCNCTT
    TTAAAAAAGG CCCNTTNCCC CCCAACTNGG NCNNTCCCNT TANTNCNNNN
    TNNNGGAAAA ANTNNGNGNG NNNANNAATT NNNAAAANAA TNTNNNNNAA
    NTAAAAAAAA AA

AT5G64735.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-His (anticodon: GTG)
Link
InterPro Scan - TAIR

AT5G64740.1

Model type
Protein coding
Short Description
cellulose synthase 6
Curator Summary
Encodes a cellulose synthase isomer. CESA6 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA6, along with CESA1 and CESA3 are present in the same plasma membrane complex for cellulose biosynthesis. CESA2 and CESA5 are related to CESA6, having partially redundant roles. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening.
Computational Description
cellulose synthase 6 (CESA6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 6 processes; LOCATED IN: cortical microtubule, transverse to long axis, Golgi apparatus, cellulose synthase complex, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: cellulose synthase 5 (TAIR:AT5G09870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR