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13-0229-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1521185 [Map]; Strand: w
      • AT3G05330.1 - [+] show detail - cyclin family
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-0229-1 - 5-prime edge
    CCACCATCGC CACTTTCCTC TGCTTCTGTG GGGTTCTTGC AACCATCTTC 
    TATATATATT TTCTTTAAAT TCTCACTAGA TTAACCCAAA AACTTCTCTC
    TGTTTGAAAA CTTGGGCCTT TGAAGATAAA AAGCTCAAGC CTTTGTAATA
    AAACCACCCA TAACAAGATC CTCACAACAG CTTCAAGAAA CCCAGATTTC
    TCTCTCACTC TCTCTTTCCT TCTCTCGATC TCAATCACTC TAGAATGTCT
    TTTTAGGTTA CGGACACCAA CATAAACGCG AATCCTATCT TCGATTTGGG
    TCTTGTTTGT TGTGTCTATT TGGGTCTTGT CGGAACGTAA AGTCAATTAG
    GCACGGGAAC TGAGAGAGAG AGCGGATAAA GGNGTTCACT TTCGTAACGG
    ATCTTTCGTT ACTATTTAAT TTTATTTATT TTTTTGNCCC AACGGGCTAA
    TACNCTTACT CATAANGGGT ATTTTTTTTT ANTGNGNGNG AGCCNATTTT
    NCTTTNTAAT TNTTNAAACA AAAANGGGGG GGAAATAAAN GGNNCGGGGG
    GGGNANATNA ACCNGNNNNC CCCNGNNGNN NANNTNTNNT TTTTNNGGNC
    NCCNNANNNN NNANNGGGNN ANAANNNNTN NGGGNGGGNA AAAAAAANTG
    GGGGNAAAAN NNTNA
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1521069 [Map]; Strand: w
      • AT3G05330.1 - [+] show detail - cyclin family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0229-1 - 3-prime edge
    GATGGTGGTG CCTCCTCTCA ACTCAGATCT TCTCAAGGAA ACGATCAACA 
    AGGTATTTTA TCCAATTTAA TACAAAGATT AGCATAAAGT TTACCTGCTT
    TAATTTTATC AGAATTTGCA AACGCCTCCA GTTCTAAGGC TCCTTCCCAC
    TATGTTTGAA GCT

AT3G05330.1

Model type
Protein coding
Short Description
cyclin family
Curator Summary
Encodes a protein with moderate sequence similarity to the maize microtubule-binding protein TANGLED1. A single base-pair deletion (-A) at position Chr3:1519176 in Columbia relative to the Landsberg erecta and Achkarren-2 ecotype (see ESTs DR378436 and CB26450) introduces a frame-shift and premature termination codon. The protein encoded from the Columbia gene is truncated by 29 amino acids relative to the Landsberg erecta and Achkarren-2 encoded proteins. Involved in the identification of the division plane during mitosis amd cytokinesis
Computational Description
TANGLED (ATN); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytokinesis, initiation of separation, phragmoplast assembly; LOCATED IN: microtubule associated complex, preprophase band; EXPRESSED IN: cultured cell; Has 705 Blast hits to 473 proteins in 108 species: Archae - 0; Bacteria - 3; Metazoa - 504; Fungi - 31; Plants - 75; Viruses - 28; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR