13-0147-1 - RIKEN Arabidopsis Genome Encyclopedia
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13-0147-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3205681 [Map]; Strand: c
      • AT3G10340.1 - [+] show detail - phenylalanine ammonia-lyase 4
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0147-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTGG NTAGGCGAAA AAGAGATCAC CGATNACAAA
    CTTTTAACTT GTTTCACCAT TTTCATACCC GAATCAAAAT CTTCCTTTTT
    CTATTAATAA GTTTATATAT CTAAAATTTC TTCACTAGTT TCAATTTTCA
    ACGCATTTAA TTTCAGTTTA CAATAATTCT TGAAAAAAAT CGTTGCTATA
    ATTACTTCGT TACCTATCTG AAACTTTATG AATTATTATG AGTAGTACTA
    CTACTATCAA GTTTCTAAGC TN
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3205737 [Map]; Strand: c
      • AT3G10340.1 - [+] show detail - phenylalanine ammonia-lyase 4
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0147-1 - 3-prime edge
    ATTTTCCTTA CTTTTGGCAC TTTTTTTTTA CTTCACAATT TTTGGTACTG 
    ATTTGACCTA ATACTTAGGT GACTAATATT TTGGCAGCAC TATTTAGCTG
    AATAAGTTGG NGTTTGGCAA TAATAATTAG GTGAAATTAA GTTACACATA
    ACAGTCGNGG ACGCTATTAA TTATATTCTT CATACACCAT AATTTTAAGC
    CGGTCATTTT CAACAATTAA TATTTGTCAA GGACGAAATT AACGGTAACG
    TGCAATTAAT GACTCGAGCA GGTTCTTGAA TGCCGGAATA TTTGGCCCCG
    GCGCCGGGGA CACGTCACAC ACGTTGCCAA AGCCGACAAC AANAGCGGCA
    ATGCTCGTCC GTGTCAACAC TCTCCTCCAA GGCTACTCCG GTATACNCTT
    CGANATTCTC GAAGCAATTA CAAAGCT

AT3G10340.1

Model type
Protein coding
Short Description
phenylalanine ammonia-lyase 4
Curator Summary
Encodes PAL4, a putative a phenylalanine ammonia-lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description
phenylalanine ammonia-lyase 4 (PAL4); FUNCTIONS IN: ammonia-lyase activity, catalytic activity; INVOLVED IN: L-phenylalanine catabolic process, biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: PHE ammonia lyase 1 (TAIR:AT2G37040.1); Has 4898 Blast hits to 4876 proteins in 1415 species: Archae - 40; Bacteria - 2975; Metazoa - 80; Fungi - 127; Plants - 1177; Viruses - 0; Other Eukaryotes - 499 (source: NCBI BLink).
Link
InterPro Scan - TAIR