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12-5375-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7938677 [Map]; Strand: c
      • AT1G22490.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-5375-1 - 5-prime edge 
    GGGNNAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTGT CCACCATTTG TTTCAGGAGA TATTTAGCAA 
    ATAGAAAGAT ATTTTGTTAT AGTTATCTAC ATCCTTATAA TTTTGTTTGT 
    TGCAACTTTT TTCAAGAAAA GTTATGTATA TCTTTATTTC TTAAGAGAAA 
    ATGTGTTGGT TCAGGTTGAA GAAGGAAGCC AACTGAATAC CGTGGACGAC 
    ATTGCAACAG CTTTGAATCA AACCATAAGG AGGATTCAAG AAGAGACATT 
    ATTCAGCAAA TAGATTATAA TTAACTTGTT TTATTTTTAT TTTATTTTGA 
    AATAACTGAA ATCAGTTTTC TAATTTATGT ATTTTTTTTT TCACTNTNCC 
    TNTAATCCTC CCTNTGTAAG TGGCNTTTTN GNCTNTNGTA ANGAATCAAN 
    GGNCNTAAAN ATN

AT1G22490.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G72210.1); Has 1544 Blast hits to 1534 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 34; Plants - 1460; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR