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Mutant Lines
12-5139-1

12-5139-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 10284931 [Map]; Strand: w
- AT3G27750.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: 0; Region: exon1 (CDS)

GCCATACCCA TACCCTTAGC GTCATCAGTT CCTAAGAGAA CGTTCGTTTC 
AATCCGATGC GGTCCACGAG ACAACCGCGG ACCACTTCTC AAAGGTCGAA 
TCCTAAGCAC CGAAGCAATC CAATCAATCC AATCTCTCAA ACGAGCTCAT 
CGAACCGGTG TCTCCCTCTC CCTTACCCTC CGTCCTCTCC GCCGTCTCAT 
AAAATCCGAT CTCATCTCCG TCCTCCGTGA GCTTNTCCGT CAAGACTATT 
GCACACTCGC TGTCCATGTA CTCTCCACTC TCCGTACAGA GTATCCTCCT 
CTTGACCTTG TTCTATACGC AGACATTGTT AATGCTCTTA CGAGGAATAA 
AGAGTTCGAT GAGATAGATC GTCTTATTGG TGAAATTGAT GGAATTGATC 
AAAGAAGTGA TGATAAGGCT TTAGCTAAGT TGATTAGGGC TGTGGTTGGA 
GCTGAGAGGA GAGAGTCGGT GGTTAGGGTT TATACCTTGA TGAGGGAAAG 
TGGTTGGGGG TCTGAGTCAT GGGAGGCTGA TGAGTATGTC GCTGAGGTTT 
TGAGTAAAGG TCTCTTGAGA CTAGGAGAGC CAGACTTGGC TTCTCAAGTC 
TCACTCAATC TTCAATTCTA AAACCTTNGA ATTTTCNGGT TTTTCGGTTT 
GGTTTGGTTC GGTTTTGATT AANNTTNAN

3 prime edge [+] show sequence

Chromosome: 3; Position: 10284815 [Map]; Strand: w
- AT3G27740.1 - [+] show detail - carbamoyl phosphate synthetase A
  Distance: -949; Region: promoter
- AT3G27740.2 - [+] show detail - carbamoyl phosphate synthetase A
  Distance: -949; Region: promoter
- AT3G27750.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: 0; Region: exon1 (5UTR)

GGTATGGCTA AGGCATGGTG GTCGAGTCTG GCTGAGAGAA AGCGCCATTA 
TTAATCACAC CAATCTTTAC GAGTGTGGTT GTGTGTGTGA GAGAGATGAT 
CTTTCATTGG GCAAGCCCAT ATCATTTATA TAGGCCCATA TTAATTTATA 
AAAGGCCCAT ATGTGACACA AAATTAATTA ATTTATACTT TCTAATGCGT 
CGTTTATATT TCTGTTCCCG CTAATTTCTC TACACGAGTC TATCATTACA 
CTTGTAAGAG CGACTCTATC TTCTTCTTTT TTTTCAAATT TTTGTTTCGT 
TAAAAAGTTA AATTTTATAC CAATTTGACG ACTTTATCTT CTTCTTTTTT 
TTTTAAATNG CTTTTTTTTT TTNNTAAAAA ANTAAANTTT TNNCCNATTT 
TNNTTTTTNA NCTTTTTNCC AAANNTNCCA AANNCCTTTT AAAANNNTNN 
NCCAAAAAAA NAANNCCCCC TTTNNNCNNA AAAAGGGNNG GGNNNNTTTT 
TTNCCAAAAA ANCCCNNTTT CNAAAAAAAC CCCCCNATTT NNTTTTNGNA 
AANNTAAAAA NTNACNNNNN GGGGCNNNNN NCCNCGNNNN NNNTT

AT3G27740.1

Model type: Protein coding
Short Description: carbamoyl phosphate synthetase A
Curator Summary: carbamoyl phosphate synthetase small subunit mRNA (carA),
Computational Description: carbamoyl phosphate synthetase A (CARA); FUNCTIONS IN: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity, catalytic activity; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Carbamoyl phosphate synthase, small subunit, N-terminal (InterPro:IPR002474), Glutamine amidotransferase type 1 (InterPro:IPR017926), Carbamoyl phosphate synthase, small subunit (InterPro:IPR006274), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit 1 (TAIR:AT1G25220.1); Has 23531 Blast hits to 23511 proteins in 4128 species: Archae - 520; Bacteria - 13864; Metazoa - 1675; Fungi - 510; Plants - 198; Viruses - 0; Other Eukaryotes - 6764 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G27740.2

Model type: Protein coding
Short Description: carbamoyl phosphate synthetase A
Curator Summary: carbamoyl phosphate synthetase small subunit mRNA (carA),
Computational Description: carbamoyl phosphate synthetase A (CARA); FUNCTIONS IN: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity, catalytic activity; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Carbamoyl phosphate synthase, small subunit, N-terminal (InterPro:IPR002474), Glutamine amidotransferase type 1 (InterPro:IPR017926), Carbamoyl phosphate synthase, small subunit (InterPro:IPR006274), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit 1 (TAIR:AT1G25220.1); Has 28262 Blast hits to 23423 proteins in 4115 species: Archae - 591; Bacteria - 17320; Metazoa - 1741; Fungi - 716; Plants - 245; Viruses - 0; Other Eukaryotes - 7649 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G27750.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR