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12-4903-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9963417 [Map]; Strand: c
      • AT4G17920.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4903-1 - 5-prime edge 
    TTCAGGACAG ACCAGTAGCA TCAAAAAGGA ACAAAACTTG CCGGAGAAAT 
    TCTCTAGATC GCATTCTACG GGACACTCGA TAGTGAGAAA TAAACCGGAG 
    GAAGAAGACA AGTATACATT GAGATTACCA GAACATGTAA AGATTAAGGT 
    CACGAGAGGA CATAGCCAGA CAGAGAGTTG TGTTACGTTC GCTGAACTTA 
    TTAGAAACAG AGGATATGAT CATCGCCGGT TTGGTGAAGT CTCTGGTCAA 
    ACGCAATCTA AAAATTGAAG AAGAAATAAT TATACACTTT TTTTTGGCAA 
    TTAGATTTTT TTTTTNTNGN NGTNGNATNG GTTATAAATG TNGTAGGTAG 
    NGAATTTTGN NAAAANGCTA NTTAAAAATN TTAGGGAATT TNTTTNTTTT 
    NTTTCCGGAG TTTANTANTA AAAACGGNCA NTTTNTTTTG TANNGCTAAN 
    CCAAATTTGN GAGNGATTAN CCCTNCAAAA GGAANCCTTG NGAGTNGGGA 
    GTNTNTTCCT TGNGTTCAAA TNAAATTTNT TTGCNNAACA AAAACTAAAT 
    TTGAANAANA TGAACCNNTT CTNTGGNAAA AAGNAATTNT GAACTNTTNA 
    CTGGNNTCCT NGNNCTTNAA AAAAANAAAA AATTTTTANT GGTTTTCCAA 
    NNCNTGATTN TTNCTGANTA AAACNCTANT TTTCCNNNTT TGATAATTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9963533 [Map]; Strand: c
      • AT4G17920.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4903-1 - 3-prime edge 
    GTCCTGAAGA TGGCCAAGTA TCAATCTGTG TTGTTGTCTG CTGACGATGA 
    TGATCGTCTT CTTCGTCGTC GCTTGTTTCT TGAATCACAT CTATGATCAT 
    CTCATCGACA GTAGGCTTGG TGTTTTCCGG TGGCGGAGGA GGATCAAGAT 
    CCCGACGACA AACAGGGCAA GTTCTGTGAG ATTCGAACCA GAGATCGATG 
    CATTCTTGGT GGAACACGTG GTAGCATGTT GTCAAGAGAC GTAGCACGTG 
    ATCTCCGTCG AATT

AT4G17920.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G46650.1); Has 8779 Blast hits to 8757 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 2402; Fungi - 735; Plants - 4417; Viruses - 37; Other Eukaryotes - 1188 (source: NCBI BLink).
Link
InterPro Scan - TAIR