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12-4228-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22491858 [Map]; Strand: c
      • AT1G61065.1 - [+] show detail - Protein of unknown function (DUF1218)
        Distance: -397; Region: promoter
      • AT1G61070.1 - [+] show detail - low-molecular-weight cysteine-rich 66
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 12-4228-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACTATTANCT ACCAAGGNTA AACNCTANTG 
    CCTNTTANTN ACCATNNNCN AGTCTNATGA CTTNGAANGT NTCCANTTAG 
    ATNGGACTTA CGCATACANT CTAACATANA CNTGGCTATG TATAACATAA 
    GCCATTNNTC TGTTGANNNA CCNATGGNCC ATGAGGNTNT ATCNNGATCT 
    NATNGNNNNC TNAANNAGGG CCTAGTGACT CANATGCCGA ATTTTCTTAC 
    CACTAAAATG TTGATTTACC AACTAAATAA AATTTTCTCT TATAATTTCA 
    TTTAGCAATA ATCAAAATAA TATTCGAAAA GACAAAAGAG CATGTAAAAA 
    GCGTGCGAAT GGAGAACAAC AAAATAACAA AAAATTAATA ACACGTGTCC 
    TCTTCGTTCA CAAGTTTCCT CTTTCCTTAG CACAGTATGT TTTTTGACTT 
    CTTCGCGTCG GCGATATTAT CCAGAAACAG TAGTGTAGAA GAAGAAGAAG 
    AAGAGATTCT GAGGTTAGAG TTTTGTTTGT GTTGGTTCGA ATTGAGCAGC 
    TATGGCTTCC GTGTTGCTAC TACTTCTGGT GTTCGNGTTT GATCTCATTG 
    CTTTTGGTCT TGCTGTTGCT GCNNAGCACC NAANAACCAC CGNNNGNNNC 
    TCTCTCTTTA CTTNTTCNAA CATTNNTTGN CAAATTTATT NGATATAAGN 
    GNGNNTATCT CTNAATNNNA NATNTTNGGA TCTNTNTGCT NAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22491857 [Map]; Strand: c
      • AT1G61065.1 - [+] show detail - Protein of unknown function (DUF1218)
        Distance: -396; Region: promoter
      • AT1G61070.1 - [+] show detail - low-molecular-weight cysteine-rich 66
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 12-4228-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTAATAGAA 
    AGCTCAAGCC AAAAGGGCTT AAAGATTTTA GATCTCCTTA TTGTTGTTTC 
    AAAGGCAAAG GATAGGATAA AAGTCAGAAA ATGATCAAAG AGATAGAAAA 
    GATTATTAAG TTTTTGATAA TATATATTCA TTATATATAA ATAGATCATC 
    TATCAACAAG GTCTGGTGCA CAAACAGCGA CGACGGAATC CACGGCAGTC 
    ACCATCTGAA AAACCTTCAT TGTGGCAAAC ATTAGCGCAA TTGCTTGAGC 
    TCAGACATGG TCCATTGAAC AAGTTGCTAC TCGTTTCACA CGTCCGTGCC 
    TCTACCGTGA CCGGACCCAT CACTACAAGA CATTGGTTAA ACGTTATAGA 
    TTATTCGAAC ATGTAATTAA TATGGGCTTA TCCACAAGCT

AT1G61065.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1218)
Computational Description
Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G27435.1); Has 557 Blast hits to 557 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 557; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61070.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 66
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 66 (LCR66); INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 405 Blast hits to 405 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR