1. Home
  2. Mutant Lines
  3. 12-4169-1

12-4169-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24590154 [Map]; Strand: w
      • AT1G66050.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-4169-1 - 5-prime edge 
    GTGGTGACGA TGGTGTCGAT GATGAAGAAA AGAAGAAGTT AGAAATCTTT 
    TGTTCTATTT GCATTCAATT GCCAGAGAGA CCTGTCACGG TTCGTTTTCA 
    CTCGCTAATT TATGCNTTGT GACTTTGTGT TAATGACNTT GTTAGATCTT 
    GTGATCAATA CACATAAGCC CTACTAAATC GCTAATTTAT GCTTGTGACT 
    TGTGTTAATG ACGTGTTATA TCTTGTGATT ATTGTTAATA ATAGTAGTAG 
    AATCGCGAAT TTATGCTTGT GGTCTGTGTT AATGCCTTGT TTAATCTTGT 
    GATGAGTACA CATAAGTGTA GTAGAATCGC TAGTTTATTT GTATACTTGA 
    TAATGATGAT TAGTGTATTC AAGTAGCAGA CTAATGGATG TATTGTTCTT 
    TTGTGTTTTG TAGACACCGT GTGGGCACAA TTTCTGTTTG AAATGTTTCG 
    AGAAATGGGC AGTAGGTCAA GGGAAGCTAA CTTGTATGAT ATGCCGAAGC 
    AAAATTCCGA GACATGTGGC GAAAAATCCT CGCATCAACT TAGCTCTAGT 
    TTCTGCTATT CGTTTAGCAA ATGTTACCAA ATGTTCTGGT GAGGCAACTG 
    CGGCCAAGGT TCATCATATT ATCCGCAACC AAGACCGTCC TGACAAAGCA 
    TTTACTACCG AGCGGGCAGT AAAACTGGGA AAGCTAATGC TGCTAGCGGN 
    AAGTTTTTTG NGACAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24589823 [Map]; Strand: w
      • AT1G66050.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4169-1 - 3-prime edge 
    GTCACCACCA CCACTCATCA GTCTCTGCCT CTTTTTGGCT TTCTCAGCTT 
    CGGTCAAAGT CACATCAGCC TGAATCGCAC GGATCGCAGC AACGAGAACT 
    GAACCGGAAG ATTCAGGTCC GGAGATTCCG GTACCCGGAG CGGCGGAGGG 
    AACAACAACG CCGGAGCAAT CGGGACACTC CCAGTCTCCA GTGGAAGAAG 
    CGAGTGATTC AGGAAGGAGA CACGACACGT GCCATGGAGT GACACAGGTG 
    CCACACGTGA GAGTCTCTTC TGACGGAGGA TTCACCTGGC ACCGCATACA 
    TACACCGTCT CCGTCGCAAG GAAGCTGAGT TTGAATCGCC ATTGTTGAAA 
    CGAGTGAGTG AGAGAGAGAT TTAGAGAGAA AATGGTGTTG TCGAGATTTG 
    GTGAGAGATT TAGGCTAAAT AAGTAGAGGA AGGCGAAAAG TGAAGAGGCG 
    GGTTTTGAAA TTTTGGGAAG ACGAATT

AT1G66050.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Curator Summary
Encodes a protein that is similar to VIM1 but is not involved in cytosine methylation. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. ORTH5/VIM2 has E3 ubiquitin ligase activity in vitro.
Computational Description
VARIANT IN METHYLATION 2 (VIM2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66040.1); Has 6271 Blast hits to 5010 proteins in 428 species: Archae - 0; Bacteria - 14; Metazoa - 4526; Fungi - 407; Plants - 903; Viruses - 19; Other Eukaryotes - 402 (source: NCBI BLink).
Link
InterPro Scan - TAIR