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12-3338-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22628378 [Map]; Strand: c
      • AT1G61340.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G61340.2 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-3338-1 - 3-prime edge 
    CCCACAAACA TATACTTTCA AGACTCACAT CAACAAATCT CGGAAAATCT 
    TCGGAAAAAT CTTATTTATT TGTAAGTTTG TTTCTTGCTC TTAGATTCAC 
    TTTTCATTTT CTCTTTATCC AATTCCTCTG TTTTGGGGAT TCTCTGAAAT 
    TTGCGGAAAG ATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22628262 [Map]; Strand: c
      • AT1G61340.1 - [+] show detail - F-box family protein
        Distance: -3; Region: promoter
      • AT1G61340.2 - [+] show detail - F-box family protein
        Distance: -3; Region: promoter
    Flanking Genome Sequence: 12-3338-1 - 5-prime edge 
    TTTGTGGGAA ATGAACAAAA GCTGAGAGAA AAATGAGTAA TTTTTCTTTT 
    TTGGTGTTAA TATTATGACT AGACAAAGAA AATGGAACTA CTACTTCTTC 
    TCTACTTATA GTAGATTAAT TATCTTTCTT TTTCTTTTTA AGTCAATTTA 
    TTATTATTTA AATGAAAACG AGTAAAGTAG AAAATGCTGG AAATTTCCTA 
    AGCAAAAAAA AATATCTAAA TTTTTTAAAT TTNGTNGTTC TCCCTCTCTT 
    CCTTCCTTTT NGCNGGTAAG CAAAANACGG CTTACAAAAA AACTANCCGT 
    NGNGAAAAGA CNCGTGGNGA ACTCTGANCC GAANAAGGAA CCAACGNGGG 
    NGGTTCGNGT GCTGACGTGA CGACAAGTTG TTCGTTNGAC GGTTNAGTCT 
    CACACGGTTT TGTTCTTAGG ATTCCCAAAA GTAAATATCT TTCCGGTCTC 
    TGACACAGTC TTTCATAATC TAACACTTAT CAGTTATCAC CGACCAANAG 
    AAATTANATG ATTTTATGTT NAATTNNATA ATNATGGATN ACTCTTTGTT 
    TTAATCCATT GTTNTTTTTT GGGACATTTA NTNNTGGNNT NTGCAATNGA 
    GTTNCTTTNA TGNNAANATN GNNTCATNTA NATNACNNNN CCGGGCCGGN 
    NANCNNCCNG NCCCC

AT1G61340.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G05010.1); Has 91 Blast hits to 91 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61340.2

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G21510.1).
Link
InterPro Scan - TAIR