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Mutant Lines
12-1625-1

12-1625-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 576197 [Map]; Strand: c
  - AT4G01400.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: 0; Region: exon2 (CDS)
  - AT4G01400.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: -480; Region: promoter
  - AT4G01400.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 12-1625-1 - 3-prime edge
```
CCGAGAAATG AGGAGAAAAC CCTTTGGATA TCATCTCTTC TAGATACTTC 
TTCCCTTCAT CAAACATTCC TTGATCACAC AATCCTCCAA TCAAAGTCCT 
ATACGAGACC GAATTAGGCG AGCAACCGTT AGACAACATA TCATCAAGAA 
CTTTCCTAGC ATCCATCGCA CGATCTTCTC TACAAAACCC GAGAATCATC 
GTGTTGTAAT GAACAAGATC AGGATTACAA CCTTTTAACT GCATCCTACA 
TAGAAGCT
```
5 prime edge [+] show sequence
1. Chromosome: 4; Position: 576081 [Map]; Strand: c
  - AT4G01400.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: 0; Region: exon2 (CDS)
  - AT4G01400.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: -364; Region: promoter
  - AT4G01400.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 12-1625-1 - 5-prime edge
```
TTTCTCGGTT TCAAATTGTT TGGTAAAAGG GTTTTGTAGC TTCGGGAAAG 
TCGAAGAAGC T
```

AT4G01400.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01400.2

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167); Has 465 Blast hits to 425 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 153; Fungi - 166; Plants - 45; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01400.3

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink).
Link: InterPro Scan - TAIR