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12-1199-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 213997 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -300; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -300; Region: promoter
    Flanking Genome Sequence: 12-1199-1 - 5-prime edge 
    CACCCACATC TCATCTTCAA TCAAAGATAT TTTCATATAA TTGAATACAT 
    ATATGGGGTT CAACAAATTA TAATTCTAAA TTTACATTAG ATGTCTAAAT 
    TCGTAAAAGT GAAAAGAAAA TATATAAATT GATCATTGGT CGAATGTGCA 
    ATCATCAATA ACTAAACATA TGTATAATTT CCCATTGGAG CTAATAATTT 
    ATTTGTGGGT GTGGAGGGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 214113 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -416; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -416; Region: promoter
    Flanking Genome Sequence: 12-1199-1 - 3-prime edge 
    TGTGGGTGAA TGTTCAATGT ATATATCATC CCTTGACCTT TATATTTTTA 
    AGAAGTAATC TTTGGTCGGT CTATAGTAAC ACCTCCATTG GGAATTTTAT 
    TTTAATTCTA TGTGTCAACC GTTTATTAAA TTAGACCAAT TATCACATGG 
    TTGGAGATTG GCTTATCCCC ATGTAGCCTA CACGATGAAC CGCAACTCAT 
    AATAGGTTAA TATTTATATT AGTGTAATGT ATTATGGTTT CAATTTGAGT 
    TGTATAGTTA TAATTTAGTT TAGCACATGA TAATTTAATG TAATGGAGAA 
    GACAAGTATA TATTTGCATG GTTCGTGCGT TAGACAGACG TGCGTCCCAT 
    TTTCTCGTTG TACACGCATT TTACGCATTT ACTTAATCTA TGGGTCATTA 
    TTTTAGTGTA CTATGGACTA TGATATTATA CAATATTAAT AAGTTTCAAC 
    ATATACACCT TTATTTACTT GTTGAGATAT GTTCCATATA CTTATATTTT 
    AAAAATAAAC TTAATATAAG TATGTCTAAC ATATTCAACA AATTTTAGTT 
    AATAGAAAGT GAACTAAGGA GTATAGACAA TGCATACATA TAACTAGGTA 
    GCAAAAAATT AGTAATTATA TGGGTTGAAA AATTAAATGA AAGTAAGAAA 
    AATGTTACAT CAAAAGATAT AAATGCATAC CATTCATTAC ATTA

AT4G00460.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 292 Blast hits to 291 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR