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12-0874-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 211292 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: intron6 (3UTR)
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 12-0874-1 - 5-prime edge 
    AGTACAATAA GGTAAAAACT GAAGAATAGA GTGTCTCATT GAATTTGATA 
    GTACACTATA GTAATTACTT AAAAAGTGTT GTGCTTTTTG GTTTGCAGGA 
    TGTTGGAAAA GCTGTGTTGG AGAGCTACCT CAAGAGTACC TTGAAGGTTT 
    AGCTTTTAAC ATAGTTGCTT GGATTGATGA TGTTCTCTAT GTAGACAAAA 
    CCATGAGAGG TAGTGAATAA AGTTGTACGT ACTAGACTTT TGACAAGAGT 
    TCTATGTTTC TGTTTCCCTC TCTTGTAAAG TAAAATCAAA TGTAAGATCC 
    TTGAAAAGAT ATACATAGCT AAGAGCAAAA AGAGAGACTA AAGTGTTCAT 
    CAATATAAAA ATTCAGGGGA ATGATAACAG TGAATTTAGT GGATAAATAA 
    TAATGGAACA AGAAACTGAG ACAATTAATT TCGAATCCCC TATATATACA 
    ACAGGGTTCC GAACCANTAT GGGTCCGGGG GATATGACCA NNAAAGCNAA 
    AAGGGNTGGT NNTATNNATN CNNAGATCTG NGGAAGCCCC NCANANACTC 
    ATTGGAGATC TTTCNTTACN ACTTGCTTCT TNNTGANCCC CCCNTAATGA 
    TAGNNCANNN TAGGNCCCCC ANATNAAANT NNNNNNNNGG GNCGNNANNN 
    NCNNNGCCNN NNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 211408 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: exon6 (3UTR)
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 12-0874-1 - 3-prime edge 
    ATTGTACTGA ATCTTGCATA TATCTAATGA TGTCTGAGAC AATTCTGGAT 
    AACGCTGTTT CAAACAGAAG AGGAGAGTCT CAGCTCTCTC AGCCATAACA 
    TAGTTCTTGT CTGTTCTCTC TGTAGTTGAC ATAAGATCTT TCACCATGTT 
    CCATGAGTTC TTGGAGTTAC TAAGACAAGA TTTGCGTCTC CATGTGTACA 
    TCGAAGCT

AT4G00460.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 292 Blast hits to 291 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR