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Mutant Lines
12-0615-1

12-0615-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 23116004 [Map]; Strand: w
- AT1G62450.1 - [+] show detail - Immunoglobulin E-set superfamily protein
  Distance: 0; Region: exon5 (CDS)

CTTAGGAGAA TGTATATACG GTGGATCATT GCCAACTCTT GCGGATGTCG 
AAGGTGTAGT TGATCTCCAA GTAGCATTTG TTATCAGTCA TCAGATGAAC 
TGAAATATGT ACAATAAGAT GACATCAAAC TCACCAAGTT CAGTGAAAAT 
AACNTGTATA TTAGTTATTT TATAACAATC TGATCAGTTT CTGCAAAACA 
TTTCATCATG TATACTAAAT GATATACCTT AGTTCTTGCG GAATAGGATC

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 23115887 [Map]; Strand: w
  - AT1G62440.1 - [+] show detail - leucine-rich repeat/extensin 2
    Distance: 594; Region: intergenic
  - AT1G62450.1 - [+] show detail - Immunoglobulin E-set superfamily protein
    Distance: 71; Region: intergenic
Flanking Genome Sequence: 12-0615-1 - 3-prime edge
```
CTCCTAAGTC TAAATCAATG CTCGTTTGAA TATTTGATCA TCAATATCTA 
TTTAATCTTA CATTCGATTT TCAAGACTAG AAAAATGATT TAGCTTTTGA 
TTAAATGAGC AGAAATAAGA GACCGTTGTG TATTTATGGA ATTTACTCTT 
CACTTTTCTT GTGATCTTTA TATCTGGTAG AGTTTTTTTT GGGCACTATT 
AATTTGAATG TAGGTAGAAT AACGGTCATA AACATAAACA ATTCTGTCAA 
AATGAATACA AACTCTTAGA AGAATT
```

AT1G62440.1

Model type: Protein coding
Short Description: leucine-rich repeat/extensin 2
Curator Summary: encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis.
Computational Description: leucine-rich repeat/extensin 2 (LRX2); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat/extensin 1 (TAIR:AT1G12040.1); Has 394418 Blast hits to 112735 proteins in 3055 species: Archae - 811; Bacteria - 65245; Metazoa - 131456; Fungi - 52175; Plants - 95400; Viruses - 7676; Other Eukaryotes - 41655 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G62450.1

Model type: Protein coding
Short Description: Immunoglobulin E-set superfamily protein
Computational Description: Immunoglobulin E-set superfamily protein; FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G12070.1); Has 657 Blast hits to 657 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 323; Fungi - 163; Plants - 122; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link: InterPro Scan - TAIR