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12-0432-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19503027 [Map]; Strand: c
      • AT2G47520.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-0432-1 - 5-prime edge 
    NANTTAAATT ANCGAAGAGG NGGGATACCT AACACCAGGG GGGAGAATNA 
    AAATGAANCG TNATCTTCTT GAAAACCANC GTATGAGAGC CTTATCGGAN 
    GACCTGANGG CCTTGCAGGA TTACATGAGA TTCTATCANA TTCCGGTTGC 
    CGACGACCAA TCGGCGACCG ATATTGGAGG GGTATGGAGC TATCAAGACT 
    CCAATTAAAT CTCTTATTTC CCGGCCGGTT TGCTCACTCA TTAATATGCN 
    GCNAATTTAC TTGNTTTTTA CTTAANANTN AANTCTAGTT NGGGNCGANG 
    AGGGNNNNGA GGGGNGNGAG GANNAANTGN AGANGNNGGG NNAGGGGGNN 
    NGCANGGAGG AAAGNAAGNG GAAAAGNTAG NCTNNNGTTG NGGGTGNGGT 
    CNNGAGGNGN NCCNGNNGNG NAGNGGGNNG GCGGGGNNCC TNNNGGNAGG 
    AGNNGGGGGG GGGGGGGNGG GGNGTGNGGC GNGAGNAAGN NGNCCCNGCG 
    GAAGGNNNGA GGAAAGCCNC GNGGGNGGGG GGTGAAANNN GCGTANNAAN 
    NNAAANGTAG ANAGNNNACA TGAAANNNNN NCGNGAACAA AGNNAANAAA 
    AANAAAATAN AAGNNTAANA ATNNGANAGA GAAAANAAAG AANNNNANAN 
    NAANANGANG AAAGNANGAA GAAAAATNAA GAAAAGANAG NAAGANAGGC 
    AAAAANGCAC AATAAGANAA NAAAAAANAG NNGAAGAAAG ANGTANGACG 
    AANNGAGGAA GAG

AT2G47520.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 (HRE2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 6285 Blast hits to 5826 proteins in 255 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6266; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR