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12-0295-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 507602 [Map]; Strand: w
      • AT2G02070.1 - [+] show detail - indeterminate(ID)-domain 5
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-0295-1 - 5-prime edge 
    TAGACAAATA CATCATCATA GTTGAAATGT GACACAACAT TGTACTCCTA 
    TTTATGTGTA TGCGTGCAAT TTTATTGTAT GCATCAAACA TGTGAGTGTG 
    TAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 507486 [Map]; Strand: w
      • AT2G02070.1 - [+] show detail - indeterminate(ID)-domain 5
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-0295-1 - 3-prime edge 
    TTTGTCTATA TGACTATGTG TACGAACAAA TCTAACTCTT ATCAATATCA 
    GTTTATGCAA TAATAATAAA CATAAACATT ATTAATCAAC TCCGGAAAAC 
    TATTATGCTT AATTCACTAT AATTTATGTA TGAAACTATG AATATAGCTA 
    TCTATATAAT AAATTAATGT GGTATTCAAC GAATT

AT2G02070.1

Model type
Protein coding
Short Description
indeterminate(ID)-domain 5
Computational Description
indeterminate(ID)-domain 5 (IDD5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1); Has 61158 Blast hits to 25844 proteins in 587 species: Archae - 8; Bacteria - 480; Metazoa - 52168; Fungi - 1154; Plants - 982; Viruses - 10; Other Eukaryotes - 6356 (source: NCBI BLink).
Link
InterPro Scan - TAIR