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Mutant Lines
12-0292-1

12-0292-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 22491896 [Map]; Strand: c
  - AT1G61065.1 - [+] show detail - Protein of unknown function (DUF1218)
    Distance: -435; Region: promoter
  - AT1G61070.1 - [+] show detail - low-molecular-weight cysteine-rich 66
    Distance: 0; Region: exon2 (3UTR)
Flanking Genome Sequence: 12-0292-1 - 5-prime edge
```
TTAATAATCT TTTCTATCTC TTTGATCATT NTCTGACTTT TATCCTATCC 
TTTGCCTTTG AAACAACAAT AAGGAGATC
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 22608730 [Map]; Strand: w
- AT1G61300.1 - [+] show detail - LRR and NB-ARC domains-containing disease resistance protein
  Distance: 0; Region: exon1 (CDS)

GATATCGGGG CTNGNCTTTT TGCAGGTGNG GGANTGGNCT GTTTANAAAA 
ATAAAGCAAC TGCCTGTTGG CCTCAAAGAG TTGAAAAAGC TAACTTTTCT 
GAATTTGGAT TGTACTANGC GACTTTGTAN TATCAGTGGG ATATNAAGGT 
TGTTGANTTT AAAAANNAAA AAACTNCNNT GGTCNGNNGG GGGNGGACCA 
TNCTANNNGT ACTGAAANGA ANANAAAAAT NTCNNANAAT GTANGAGANA 
ANNAACCCNC NNCNNTNTTN TNNANNNNNN NTTTTTATNG AAANNAANTN 
NTTNTTNTTT CTAANANNGN AAAAGNNNNA AANAANANTA TTANTCGGNN 
GCNNNTNGGG GGNGNGGGGT TTTTTTNTNC NNANCCNNNN NCCCTTNAAA 
AAAAANNNTG AATNAGANNN ACAATAANAN ANNGNNAAAG NATNNNANNG 
GTNNTNANAN TTNCCTCNAN ANNATCNGCN NNAACGNNNG GGNNCCNACG 
TCNCGNGNAC GANGNGNNNN AAAAAGNGTN NNTAGTGANA NNGAGNNNAN 
GGNGAANACA ATGNNCCCAA CTNANGACAN NCCTNGNGCN CAGGANCNNA 
NCNAANAAAN NCACCNANAN NCGANAAGNA ANGCNGCNNA NNNNGCAAAA 
NNNNCAAGGA ACTAGCAAAC CNNTGCNTAT ANCNGTNTAN NNCACGNCAT 
NCNTNATTCA AATCANATCC CNCCTNCAAT TACGCNANAG NAAATACAAA 
NNNAANCNAN ANAACAANAA NAACAAAAAA NANACAAAAA NAAAN

AT1G61065.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1218)
Computational Description: Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G27435.1); Has 557 Blast hits to 557 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 557; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G61070.1

Model type: Protein coding
Short Description: low-molecular-weight cysteine-rich 66
Curator Summary: Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description: low-molecular-weight cysteine-rich 66 (LCR66); INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 405 Blast hits to 405 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G61300.1

Model type: Protein coding
Short Description: LRR and NB-ARC domains-containing disease resistance protein
Computational Description: LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G61310.1); Has 27714 Blast hits to 22073 proteins in 822 species: Archae - 18; Bacteria - 5358; Metazoa - 4578; Fungi - 354; Plants - 16806; Viruses - 2; Other Eukaryotes - 598 (source: NCBI BLink).
Link: InterPro Scan - TAIR