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12-0209-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17137637 [Map]; Strand: w
      • AT4G36220.1 - [+] show detail - ferulic acid 5-hydroxylase 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-0209-1 - 3-prime edge 
    GATGAAACCA AGTGAGCTCG ACATGAATGA TGTGTTTGGT CTCACGGCTC 
    CTAAAGCCAC GCGGCTTTTC GCCGTGCCAA CCACGCGCCT CATCTGTGCT 
    CTTTAAGTTT ATGGTTCGAG TCACAGTGGC AGGGGGTTTG GTATGGTGAA 
    AACTTGAAAA GTTTGAAGTT GCCCTCATCG AGGATTTGTG GATGTCATAT 
    GTATGTATGT GTATACACGT GTGTTCTGAT GAAAACAGAT TTGGCTCTTT 
    GTTTGCCCTT TTTTTTTTTT TTTNAAGGGG NNTTTCCCTN NANNAAANNG 
    TACCANNAAA AANAAAATTT TTTNCAANAA NNANTTAACN NTNTNNNAAA 
    AANCAATNTN GNNNNAAANN TTTTCNTNAA AAAAAAAAAA AANTTTTTTT 
    TTNANNNNTA NNNCCNTTTT TTTTTTGTNN NGGGGGGGGG GGGGGGCCCN 
    NTTGNNGAAN ANNNGGGGGG GNAAAATCCC TGNGGNANNN CCNAATANNA 
    ANNNTNAAAA TTTTNTATTT TNCAACGNCC CCNCCAAAAN NGGGCCGGAN 
    NAAACCCCCG NTNTNTTTTT TANAAAAAAA NNCTNGGGGG NTTTTNTANN 
    TTTTTTTTTT CAAANTANNG NNNNCCANCN TTCTTNTTTT TNTTTTTTNN 
    NCAAAAAAGN ANGTCNTNAN NCNNANAGGN NGNNNNGGNG GAAAACANCC 
    NCAACCNNNN GNTNTCTTNN NNAAAAAAAA ANNAANAGNG GNAGNANNAA 
    NTTCNNTTAC AAAANANTAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17137753 [Map]; Strand: w
      • AT4G36220.1 - [+] show detail - ferulic acid 5-hydroxylase 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-0209-1 - 5-prime edge 
    GTTTCATCCC ATCAGGTAAT TTCCACGTGA AGCAATGTAA TATATGAGCC 
    ACGGCTAAGT CAAGCGCGTA TAACCCTAGT TGCATACCCG GGCACGATCT 
    ACGACCCGAC CCGAACGGTA TAAACTCGAA ATTGCTCCCT TTGAAATCCG 
    GTACGCCCGG TTCCAAAAAC CTCGATGGTC TAAACGTGTC CGGGTCAGTC 
    CAAGAGGTTG GGTCGCGTCC TATGGCAAAC GCGTTGATCA TCACACGAGA 
    TTTCTTGGGA ATGAAGAAAC CGTCGATACT AGTGTCCTCC GCGGTTTCGT 
    GGAGGAGGAG AGGGATCGGT GGGTGCATCC TTAGGGTTTC TTTAAGTGTG 
    CATTTGAGAT AAGTCAACTT CTCGATGTCG GATTCTTCAA CTCGTCTGTC 
    AAGTCCAACG ACTTCGGCGA GTTCTTGTTG GACCCGTTTT AGATCCTCGG 
    GGCTCCGTAA TAACTCCGTT AAGGCCCACT CTATCGCCGA CGCTACCGTT 
    TCCGTTCCTC CAAACATAAC GTCCTAATAA AATCAAATAA AAAAATCAAA 
    TTAGAATTAA ATATAACGTC CTAATAAAAT CAAATTANAA TTAAATATAT 
    NCACACTANT CCACTCTTTC TTTTTTCTCT CTCCATTTTT NGNCTNTTNA 
    TTGGTTNATA ATTNTTGGNG AATCTGAATA TTCAATGCTT NTATTTNTNT 
    TAAAAAANAT CATGCTN

AT4G36220.1

Model type
Protein coding
Short Description
ferulic acid 5-hydroxylase 1
Curator Summary
encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.
Computational Description
ferulic acid 5-hydroxylase 1 (FAH1); FUNCTIONS IN: ferulate 5-hydroxylase activity, monooxygenase activity; INVOLVED IN: lignin biosynthetic process, response to UV-B, phenylpropanoid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G04330.1); Has 34463 Blast hits to 34198 proteins in 1764 species: Archae - 58; Bacteria - 4180; Metazoa - 12146; Fungi - 7203; Plants - 9525; Viruses - 6; Other Eukaryotes - 1345 (source: NCBI BLink).
Link
InterPro Scan - TAIR