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11-6909-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7336825 [Map]; Strand: w
      • AT4G12390.1 - [+] show detail - pectin methylesterase inhibitor 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6909-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTCCCTACAT AGATTGTCGT GGACTGAACC CGGACTAGAG TAACGGCTAA 
    AGCGGTTTGA GCTAACTGGT TTTCGTTGCG GCGGATTTTG TCTGCAAAAG 
    CGGCAAGGCA TTTGACGCAG AGAGTTTGGT AACGCGTGAC GCGGCATGAT 
    GAGACAATGA AGTTGATGCT GCTGCTAGGG TTTGGTGATG ATGAAGGTTT 
    GGCTATGGTG GATTGGCAGA GTAGTGGAAG AAAAAGTAGA AGGCAATAAC 
    AAAGATGGGT TAGCTTTGGT TCCATTGGTG TGTGTGTGGG GTTCTTTGTT 
    CTATTTGTGG TGCGTTTCAA TTAAAAGGCA TATGTGTGTA TACACGAGTG 
    AGGTGTTATT TATAGGAGAG CTACATTTCT TGTATTTTTT TTTGTTATAN 
    ATATTGTTTA CAAAAAGACA ATCTGTNTTA AAAAATAAAC TCCAAATGGT 
    TTTCCNTTTA GNGATTANAA AACANTACAC TTTGGAATTA CNANCCNGGG 
    CCNNNNACCA CNCNTNNNNN TTT

AT4G12390.1

Model type
Protein coding
Short Description
pectin methylesterase inhibitor 1
Computational Description
pectin methylesterase inhibitor 1 (PME1); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 665 Blast hits to 661 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 665; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR